FRMD3 Gene
protein-coding GIFtS : 45
GCID: GC09 M085857
FERM domain containing 3
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Aliasesfor FRMD3 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases FERM Domain Containing 3 1 2 MGC205531 EPB41L4O1 2 3 P4102 Band 4.1-Like Protein 4O2 3 Band 4.1-Like Protein 42 Ovary Type Protein 4.12 3 FERM Domain-Containing Protein 32 4.1O2 3 Protein 4.1O2 EPB41LO2 5
Export aliases for FRMD3 gene to outside databases Previous GC identifers: GC09M081315 GC09M083087 GC09M085047 GC09M055687
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Summariesfor FRMD3 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for FRMD3 : The protein encoded by this gene is a single pass membrane protein primarily found in ovaries. A similar protein in erythrocytes helps determine the shape of red blood cells, but the function of the encoded protein has not been determined. There is some evidence that this is a tumor suppressor gene, and there is also evidence linking defects in this gene to susceptibility to diabetic nephropathy in type 1 diabetes. Several transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Oct 2011) UniProtKB/Swiss-Prot: FRMD3_HUMAN, A2A2Y4 Function : Putative tumor suppressor gene that may be implicated in the origin and progression of lung cancer
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Genomic Viewsfor FRMD3 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000009.11 NC_018920.1 NT_008470.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the FRMD3 gene promoter: USF1 Spz1 ATF-2 CREB CRE-BP1 HEN1 E2F-1 E2F USF-1 ZID Other transcription factors Search SABiosciences Chromatin IP Primers for FRMD3 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FRMD3
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9q21.32 Ensembl cytogenetic band: 9q21.32 HGNC cytogenetic band: 9q21.33 FRMD3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M085857: view genomic region
(about GC identifiers )
Start:
85,857,905 bp from pter
End:
86,153,461 bp from pter
Size:
295,557 bases
Orientation:
minus strand
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Proteinsfor FRMD3 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: FRMD3_HUMAN, A2A2Y4 (See
protein sequence )Recommended Name: FERM domain-containing protein 3 Size : 597 amino acids; 68772 Da
Subcellular location : Membrane; Single-pass membrane protein (Potential)
Developmental stage : Expressed in skeletal muscle, lower levels in thymus and brain
Sequence caution : Sequence=BAC04321.1; Type=Erroneous initiation; Sequence=EAW62650.1; Type=Erroneous initiation;
Secondary accessions : A8MQB0 B4DN14 Q53EP2 Q5JV59 Q5VZA1 Q86WP8 Q8IZ44 Q8N3Y5 Q8N9L2Alternative splicing : 5 isoforms : A2A2Y4-1 A2A2Y4-2 A2A2Y4-3 A2A2Y4-4 A2A2Y4-5 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for FRMD3: NX_A2A2Y4 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_A2A2Y4 FRMD3 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (5 alternative transcripts):
NP_001231888.1 NP_001231889.1 NP_001231890.1 NP_001231891.1 NP_777598.3 ENSEMBL proteins: ENSP00000365621 ENSP00000365617 ENSP00000328615 ENSP00000303508 ENSP00000412719 Human Recombinant Protein Products: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
FRMD3 for ontologies About GeneDecksing FRMD3 Antibody Products: Assay Products for FRMD3:
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Protein
Domains / Familiesfor FRMD3 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
FRMD3 for domains About GeneDecksing 5/11 InterPro domains/families (see all 11 ):
Graphical View of Domain Structure for InterPro Entry A2A2Y4 ProtoNet protein and cluster: A2A2Y4
UniProtKB/Swiss-Prot: FRMD3_HUMAN, A2A2Y4 Similarity : Contains 1 FERM domain
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Functionfor FRMD3 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: FRMD3_HUMAN, A2A2Y4 Function : Putative tumor suppressor gene that may be implicated in the origin and progression of lung cancer
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FRMD3 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FRMD3OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FRMD3 (NM_174938 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FRMD3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FRMD3
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FRMD3
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008092 cytoskeletal protein binding
IEA --
FRMD3 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for FRMD3 :
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Pathways & Interactionsfor FRMD3 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FRMD3
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Drugs & Compoundsfor FRMD3 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for FRMD3 Search CenterWatch for drugs/clinical trials and news about FRMD3
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Transcriptsfor FRMD3 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for FRMD3 gene (5 alternative transcripts): NM_001244959.1 NM_001244960.1 NM_001244961.1 NM_001244962.1 NM_174938.5 Unigene Clusters for FRMD3:
FERM domain containing 3 Hs.127535 [show with all ESTs ] , Hs.743606 [show with all ESTs ] Unigene Representative Sequences: NM_174938 , BC023560 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000376438 (uc004amr.1 ) ENST00000376434 (uc022biz.1 ) ENST00000328788 (uc004amq.1 )ENST00000304195 (uc022bja.1 uc004ams.2 ) ENST00000465485 ENST00000431299 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FRMD3 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FRMD3OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FRMD3 (NM_174938 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FRMD3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FRMD3
Additional cDNA sequence: BC023560.1
8 DOTS entries : DT.99996872 DT.75180596
DT.433205 DT.100018807 DT.100018809 DT.121144399 DT.97837252 DT.75104450 24/83 AceView cDNA sequences (see all 83 ):
BM666832 BX089823 BM873990 AI984360 BM715647 BM874423 AA402220 BU189443 BF110588 BE221726 W32094 BI827685 BM674088 BC023560 AW162166 BC037253 AK094281 AI015267 AI624361 BU618212 AI540628 AW160536 BX390381 AI492565 GeneLoc Exon Structure
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Expression for FRMD3 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section FRMD3 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTACATTGGA
About this image FRMD3 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See FRMD3 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for FRMD3 SOURCE GeneReport for Unigene clusters: Hs.127535 Hs.743606 UniProtKB/Swiss-Prot: FRMD3_HUMAN, A2A2Y4 Tissue specificity : Ovary-specific SABiosciences Custom PCR Arrays for FRMD3 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FRMD3Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat FRMD3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FRMD3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FRMD3 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FRMD3
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Orthologsfor FRMD3 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for FRMD3 gene from 5/17 species (see all 17 ) About this table
ENSEMBL Gene Tree for FRMD3 (if available)TreeFam Gene Tree for FRMD3 (if available)
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Paralogsfor FRMD3 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for FRMD3 gene EPB41 2 EPB41L5 2 EPB41L1 2 EPB41L4B 2 FARP1 2 FRMD5 2 MYLIP 2 EPB41L3 2 FRMD7 2 EPB41L4A 2 FARP2 2 EPB41L2 2 11 SIMAP similar genes for FRMD3 using alignment to 2 protein entries: FRMD3_HUMAN (see all proteins ):FRMD5 EPB41L1 PTPN4 EPB41 EPB41L4A EPB41L4B EPB41L2 EPB41L5 EPB41L3 FARP2 FARP1
FRMD3 for paralogs About GeneDecksing
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Genomic Variantsfor FRMD3 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 9 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for FRMD3 (85857905 - 86107905 bp, first 250kb of FRMD3)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for FRMD3: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing FRMD3
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Disorders
/ Diseasesfor FRMD3 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
FRMD3 for disorders About GeneDecksing
OMIM gene information: 607619
OMIM disorders : --2 diseases for FRMD3 : About MalaCards nephropathy lung cancer Human Genome Epidemiology (HuGE) Navigator: FRMD3 (5 documents) Export disorders for FRMD3 gene to outside databases
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Publicationsfor FRMD3 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for FRMD3 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with FRMD3) Utopia : connect your pdf to the dynamic world of online information
Molecular cloning and characterization of the protein 4.1O gene, a novel member of the protein 4.1 family with focal expression in ovary. (PubMed id 12601556) 1 , 2 , 3, 9 Ni X....Mao Y. (2003) FRMD3, a novel putative tumour suppressor in NSCLC. (PubMed id 17260017) 1 , 2 Haase D.... Angel P. (2007) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Differential effects of MYH9 and APOL1 risk variants on FRMD3 Association with Diabetic ESRD in African Americans. (PubMed id 21698141) 1 Freedman B.I....Bowden D.W. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Replication study for the association between four Lo ci identified by a genome-wide association study on European american subjects with type 1 diabetes and susceptibility to diabetic nephropathy in Japanese sub jects with type 2 diabetes. (PubMed id 20460425) 1 Maeda S....Nakamura Y. (2010) Genome-wide association scan for diabetic nephropathy susceptibility genes in type 1 diabetes. (PubMed id 19252134) 1 Pezzolesi M.G....Krolewski A.S. (2009) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 2 Humphray S.J.... Dunham I. (2004)
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External Searches for FRMD3 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing FRMD3 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing FRMD3 gene
(According to HUGE )
About This Section --
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Specialized Databases showing FRMD3 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for FRMD3 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for FRMD3 gene: Search GeneIP for patents involving FRMD3 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor FRMD3 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for FRMD3 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for FRMD3 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FRMD3 OriGene Protein Over-expression Lysate for FRMD3 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for FRMD3 OriGene 3'-UTR Clone for FRMD3 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FRMD3 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FRMD3 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for FRMD3 OriGene Custom Protein Services for FRMD3 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FRMD3 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing FRMD3 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FRMD3 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat FRMD3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FRMD3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FRMD3
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FRMD3 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FRMD3
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FRMD3
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Aliases for FRMD3
Databases for FRMD3
Disorders / Diseases for FRMD3
Domains / Families for FRMD3
Drugs / Compounds for FRMD3
Expression for FRMD3
Function for FRMD3
Genomic Views for FRMD3
Intellectual Property for FRMD3
Orthologs for FRMD3
Paralogs for FRMD3
Pathways / Interactions for FRMD3
Products for FRMD3
Proteins for FRMD3
Publications for FRMD3
Search Box for FRMD3
Summaries for FRMD3
Transcripts for FRMD3
Variants for FRMD3
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