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Aliases for FRMD1 Gene

Aliases for FRMD1 Gene

  • FERM Domain Containing 1 2 3 5
  • FERM Domain-Containing Protein 1 3
  • BA164L23.1 3

External Ids for FRMD1 Gene

Previous GeneCards Identifiers for FRMD1 Gene

  • GC06M168138
  • GC06M168213
  • GC06M168275
  • GC06M168456
  • GC06M165885

Summaries for FRMD1 Gene

GeneCards Summary for FRMD1 Gene

FRMD1 (FERM Domain Containing 1) is a Protein Coding gene. Among its related pathways are Hippo signaling pathway and Hippo signaling pathway -multiple species. An important paralog of this gene is FRMD6.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FRMD1 Gene

Genomics for FRMD1 Gene

Regulatory Elements for FRMD1 Gene

Enhancers for FRMD1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F168289 0.6 FANTOM5 29.1 -187.8 -187844 0.1 FRMD1 CTAGE13P LOC105378138
GH06F168079 1.2 Ensembl ENCODE 21.1 +22.2 22200 0.5 KLF1 TEAD1 KLF17 RXRB TEAD3 FRMD1 PIR41270
GH06F168071 0.6 ENCODE 13.7 +29.7 29739 0.2 CTCF JUND ZNF143 CEBPB CEBPG ZNF48 RAD21 FRMD1 PIR41270
GH06F168033 1.3 Ensembl ENCODE 12 +65.4 65401 4.3 PKNOX1 ATF1 FEZF1 ZNF2 GLIS2 GATA2 FOS KLF7 SP3 NCOA1 FRMD1 KIF25-AS1 LOC105378135
GH06F168046 0.7 Ensembl 11.9 +55.2 55214 0.2 PKNOX1 ZNF692 FRMD1 LOC105378135 PIR41270
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FRMD1 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the FRMD1 gene promoter:

Genomic Location for FRMD1 Gene

Chromosome:
6
Start:
168,055,745 bp from pter
End:
168,101,514 bp from pter
Size:
45,770 bases
Orientation:
Minus strand

Genomic View for FRMD1 Gene

Genes around FRMD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FRMD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FRMD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FRMD1 Gene

Proteins for FRMD1 Gene

  • Protein details for FRMD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N878-FRMD1_HUMAN
    Recommended name:
    FERM domain-containing protein 1
    Protein Accession:
    Q8N878
    Secondary Accessions:
    • B2RNV8
    • B3KUM6
    • Q5SZU7
    • Q9UFB0

    Protein attributes for FRMD1 Gene

    Size:
    549 amino acids
    Molecular mass:
    62523 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAB61397.2; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305}; Sequence=CAI12329.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for FRMD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FRMD1 Gene

Post-translational modifications for FRMD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FRMD1 Gene

Domains & Families for FRMD1 Gene

Gene Families for FRMD1 Gene

Suggested Antigen Peptide Sequences for FRMD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N878

UniProtKB/Swiss-Prot:

FRMD1_HUMAN :
  • Contains 1 FERM domain.
Domain:
  • Contains 1 FERM domain.
genes like me logo Genes that share domains with FRMD1: view

Function for FRMD1 Gene

genes like me logo Genes that share phenotypes with FRMD1: view

Animal Model Products

miRNA for FRMD1 Gene

miRTarBase miRNAs that target FRMD1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FRMD1 Gene

Localization for FRMD1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FRMD1 Gene COMPARTMENTS Subcellular localization image for FRMD1 gene
Compartment Confidence
cytoskeleton 3
cytosol 2
nucleus 2
extracellular 1
golgi apparatus 1
lysosome 1
mitochondrion 1
peroxisome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for FRMD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005856 cytoskeleton IEA --
genes like me logo Genes that share ontologies with FRMD1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for FRMD1 Gene

Pathways & Interactions for FRMD1 Gene

genes like me logo Genes that share pathways with FRMD1: view

Pathways by source for FRMD1 Gene

Interacting Proteins for FRMD1 Gene

Gene Ontology (GO) - Biological Process for FRMD1 Gene

None

No data available for SIGNOR curated interactions for FRMD1 Gene

Transcripts for FRMD1 Gene

Unigene Clusters for FRMD1 Gene

FERM domain containing 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FRMD1 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18
SP1: - - - - -
SP2: - - - - - - - - -
SP3: - - - - - - -
SP4: - - -
SP5: - - -

Relevant External Links for FRMD1 Gene

GeneLoc Exon Structure for
FRMD1
ECgene alternative splicing isoforms for
FRMD1

Expression for FRMD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FRMD1 Gene

mRNA differential expression in normal tissues according to GTEx for FRMD1 Gene

This gene is overexpressed in Stomach (x11.9), Colon - Transverse (x11.0), Kidney - Cortex (x6.5), Nerve - Tibial (x6.3), and Testis (x5.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for FRMD1 Gene



NURSA nuclear receptor signaling pathways regulating expression of FRMD1 Gene:

FRMD1

SOURCE GeneReport for Unigene cluster for FRMD1 Gene:

Hs.266746
genes like me logo Genes that share expression patterns with FRMD1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FRMD1 Gene

Orthologs for FRMD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for FRMD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FRMD1 34 35
  • 98.47 (n)
dog
(Canis familiaris)
Mammalia FRMD1 34
  • 77.35 (n)
-- 35
  • 72 (a)
OneToMany
-- 35
  • 47 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Frmd1 34
  • 74.7 (n)
cow
(Bos Taurus)
Mammalia FRMD1 34 35
  • 71.08 (n)
oppossum
(Monodelphis domestica)
Mammalia FRMD1 35
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 4 (a)
ManyToMany
chicken
(Gallus gallus)
Aves FRMD1 35
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FRMD1 35
  • 46 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii FRMD1 (1 of 2) 35
  • 39 (a)
OneToMany
FRMD1 (2 of 2) 35
  • 34 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta ex 35
  • 9 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea frm-7 35
  • 11 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 20 (a)
OneToMany
Species where no ortholog for FRMD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for FRMD1 Gene

ENSEMBL:
Gene Tree for FRMD1 (if available)
TreeFam:
Gene Tree for FRMD1 (if available)

Paralogs for FRMD1 Gene

Paralogs for FRMD1 Gene

(2) SIMAP similar genes for FRMD1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with FRMD1: view

Variants for FRMD1 Gene

Sequence variations from dbSNP and Humsavar for FRMD1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10455755 -- 168,085,626(+) AAGGA(A/G)GCCTG intron-variant
rs10945462 -- 168,066,163(+) CGGAT(A/G)GTATA intron-variant, utr-variant-5-prime
rs10945463 -- 168,070,137(+) gagga(G/T)ccacc intron-variant
rs10945464 -- 168,074,876(+) CATGT(C/G)AGTGG intron-variant
rs10945465 -- 168,074,906(+) GTGTG(C/G)TGCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FRMD1 Gene

Variant ID Type Subtype PubMed ID
dgv11062n54 CNV gain 21841781
dgv11063n54 CNV gain 21841781
dgv11064n54 CNV gain 21841781
dgv11065n54 CNV gain 21841781
dgv1853e212 CNV gain 25503493
dgv217e55 CNV gain 17911159
dgv218e55 CNV gain 17911159
dgv27e196 CNV duplication 17116639
dgv6199n100 CNV gain 25217958
dgv61n64 CNV gain 17921354
dgv791n27 CNV gain 19166990
esv1194949 CNV deletion 17803354
esv1591785 CNV deletion 17803354
esv2212981 CNV deletion 18987734
esv2258411 CNV deletion 18987734
esv23528 CNV gain+loss 19812545
esv2422263 CNV duplication 17116639
esv2663321 CNV deletion 23128226
esv2670695 CNV deletion 23128226
esv2733274 CNV deletion 23290073
esv2733275 CNV deletion 23290073
esv2733276 CNV deletion 23290073
esv2733277 CNV deletion 23290073
esv2733278 CNV deletion 23290073
esv2733279 CNV deletion 23290073
esv2733280 CNV deletion 23290073
esv2733281 CNV deletion 23290073
esv2733282 CNV deletion 23290073
esv2733283 CNV deletion 23290073
esv2733285 CNV deletion 23290073
esv2733286 CNV deletion 23290073
esv2733287 CNV deletion 23290073
esv2733288 CNV deletion 23290073
esv2733289 CNV deletion 23290073
esv2733290 CNV deletion 23290073
esv2759493 CNV gain 17122850
esv2761051 CNV gain 21179565
esv2763949 CNV gain 21179565
esv32818 CNV gain 17666407
esv3611679 CNV gain 21293372
esv999492 CNV deletion 20482838
nsv1017078 CNV gain 25217958
nsv1031275 CNV gain 25217958
nsv1073610 CNV deletion 25765185
nsv1112446 CNV deletion 24896259
nsv1126085 CNV deletion 24896259
nsv1128290 CNV deletion 24896259
nsv1142650 CNV deletion 24896259
nsv1143331 CNV deletion 24896259
nsv1148381 CNV deletion 26484159
nsv1153328 CNV deletion 26484159
nsv350028 CNV deletion 16902084
nsv442020 CNV gain 18776908
nsv464201 CNV loss 19166990
nsv509173 CNV insertion 20534489
nsv515568 CNV gain+loss 19592680
nsv605445 CNV gain 21841781
nsv605456 CNV loss 21841781
nsv8004 CNV gain 18304495
nsv830865 CNV gain 17160897
nsv830866 CNV gain 17160897

Variation tolerance for FRMD1 Gene

Residual Variation Intolerance Score: 96.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.60; 65.34% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FRMD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FRMD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FRMD1 Gene

Disorders for FRMD1 Gene

Relevant External Links for FRMD1

Genetic Association Database (GAD)
FRMD1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FRMD1

No disorders were found for FRMD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FRMD1 Gene

Publications for FRMD1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  3. Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits. (PMID: 23527680) Ebejer J.L. … Medland S.E. (Twin Res Hum Genet 2013) 3 64
  4. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy R.B. … Poland G.A. (Hum. Genet. 2012) 3 64
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64

Products for FRMD1 Gene

Sources for FRMD1 Gene

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