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FRAT1 Gene

protein-coding   GIFtS: 54

GC10P099069
frequently rearranged in advanced T-cell lymphomas
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
FLJ97193 2
Frat-1 3
OTTHUMP00000020201 2
OTTHUMP00000059391 2
Descriptions
GSK-3 binding protein FRAT1 2
frequently rearranged in advanced T-cell lymphomas 2, 3
proto-oncogene FRAT1 2
External Ids
HGNC: 39441
Entrez Gene: 100232
UniProtKB: Q928373
Ensembl: ENSG000001658797
Search outside databases for aliases for FRAT1 gene

Previous GC identifers: GC10P097972 GC10P098312 GC10P099210 GC10P098743

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for FRAT1:
The protein encoded by this gene belongs to the GSK-3-binding protein family. The protein inhibits
GSK-3-mediated phosphorylation of beta-catenin and positively regulates the Wnt signaling pathway.
It may function in tumor progression and in lymphomagenesis. [provided by RefSeq]

UniProtKB/Swiss-Prot: FRAT1_HUMAN, Q92837
Function: Positively regulates the Wnt signaling pathway by stabilizing beta-catenin through the
association with GSK-3. May play a role in tumor progression and collaborate with PIM1 and MYC in
lymphomagenesis

Gene Wiki entry for FRAT1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the FRAT1 gene  

Entrez Gene cytogenetic band: 10q24.1   Ensembl cytogenetic band:  10q24.1   HGNC chromosome: 10

FRAT1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P099069:     (about GC identifiers)

Start:
99,069,012 bp from pter
End:
99,071,662 bp from pter
Size:
2,651 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000010.9  NT_030059.12  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: FRAT1_HUMAN, Q92837 (See protein sequence)
Recommended Name: Proto-oncogene FRAT1  
Size: 279 amino acids; 29093 Da
Subunit: Binds DVL1. Binds GSK-3 and prevent GSK-3-dependent phosphorylation
Subcellular location: Cytoplasm
PDB structures from and Proteopedia :
1GNG (3D)    
Secondary accessions: Q5JTI1 Q8NE74 Q8TDW9

Post-translational modifications:

  • Phosphorylated (By similarity)1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_005470.2  

    ENSEMBL proteins: 
    ENSP00000360060 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (FRAT1)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    1 Gene Ontology (GO) cellular component term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm IEA--
    About this table

    Antibodies for FRAT1: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for FRAT1
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    Antibodies from Abcam (FRAT1), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (FRAT1)
    Novus Biologicals Antibody for FRAT1

    Assays for FRAT1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    1 InterPro domain/family:
     IPR008014 GSK3_bd


       GeneDecks  FRAT1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q92837

    ProtoNet protein and cluster: Q92837

    1 Blocks protein family: IPB008014 Glycogen synthase kinase-3 binding protein

    UniProtKB/Swiss-Prot: FRAT1_HUMAN, Q92837
    Similarity: Belongs to the GSK-3-binding protein family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (FRAT1)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_005479

                  Applied Biosystems Silencer® siRNAs for FRAT1

                  Sigma-Aldrich siRNA for FRAT1  
                         Sigma-Aldrich shRNA for FRAT1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005479
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005479
                                     untagged cDNA clone in CMV expression vector: NM_005479 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_005479

    UniProtKB/Swiss-Prot: FRAT1_HUMAN, Q92837
    Function: Positively regulates the Wnt signaling pathway by stabilizing beta-catenin through the
    association with GSK-3. May play a role in tumor progression and collaborate with PIM1 and MYC in
    lymphomagenesis

    1 MGI mutant phenotype (inferred from 1 allele(MGI details for Frat1):

    normal

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for FRAT1 (Maps provided by GeneGo):
     WNT signaling pathway. Part 2

       GeneDecks  FRAT1 for the pathways selected above  
    About GeneDecksing

    1 Sigma-Aldrich "Your Favorite Gene" Pathway for  FRAT1  (Your Favorite Gene powered by Ingenuity) 
     Wnt/&beta

       GeneDecks  FRAT1 for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for FRAT1):
     hsa04310 Wnt signaling pathway

       GeneDecks  FRAT1 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  FRAT1 


    5/19 Interacting proteins for FRAT1 (ENSP000003600603) via UniProtKB, MINT, and/or STRING (see all 19 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GSK3BENSP000003248063STRING (score=.999)
    GSK3AENSP000002223303STRING (score=.996)
    DVL1L1ENSP000003681663STRING (score=.994)
    CTNNB1ENSP000003444563STRING (score=.986)
    APCENSP000002574303STRING (score=.899)
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000578 embryonic axis specification IEA--
    GO:0016055 Wnt receptor signaling pathway IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for FRAT1
    1 Novoseek chemical compound relationship for FRAT1 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    glycogen 59.31 4 11696357 (2), 16982607 (2)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (FRAT1)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_005479

                  Sigma-Aldrich siRNA for FRAT1  
                         Sigma-Aldrich shRNA for FRAT1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_005479  

    REFSEQ mRNAs for FRAT1 gene: 

    NM_005479.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_005479  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005479
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005479
                                     untagged cDNA clone in CMV expression vector: NM_005479 

    Additional cDNA sequence: 

    AB074890.1 AK307245.1 BC034476.1 U58975.2 

    2 DOTS entries:

    DT.402798  DT.75131198 

    24/44 AceView cDNA sequences (see all 44 ):

    AW044654 CB995777 BF590725 CA430832 AW516905 BQ016991 AA505867 BF057528 
    BF435283 AI457511 BC034476 AI761616 AB074890 BQ015843 AI470157 AI762217 
    BM995907 AA906070 BM046320 NM_005479 CD105547 NM_181355 AI685156 BF055357 

    highest scoring ESTs for FRAT1:

    AI457511 AA454723 AA454773 AA505867 AA789305 AA888915 AA906070 AB074890 AI470157 AI652791 

    Unigene Clusters for FRAT1:

    Frequently rearranged in advanced T-cell lymphomas
    Hs.126057  [show with all ESTs], Hs.715785  [show with all ESTs]
    Unigene Representative Sequences: NM_005479, U58975


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation:
    ENST00000371021  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    FRAT1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for FRAT1

    1 / 2 / 3

    3 probe-sets matching FRAT1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    81909_at2, 3 U95-E 1 1.00 1.00 1.00 1.00 AI457511 1.00 1.00 1.00 1

    219889_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005479 0.60 1.00 0.82 1

    219889_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  FRAT1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GTGAAGTGCT

    SOURCE GeneReport for Unigene clusters: Hs.126057 Hs.715785
    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for FRAT1 gene from 3 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    chimpanzee
    (Pan troglodytes)
    FRAT11   -- frequently rearranged in advanced T-cell lymphomas 99.64(n)
    98.92(a)
    466169  XM_521571.2  XP_521571.1 
    cow
    (Bos taurus)
    FRAT11   -- frequently rearranged in advanced T-cell lymphomas 86.01(n)
    83.94(a)
    505664  XM_581986.3  XP_581986.3 
    mouse
    (Mus musculus)
    Frat11, 5 19 (37.50 cM)5
    frequently rearranged in advanced T-cell lymphomas1, 5 82.11(n)1
    78.68(a)1
    142961  NM_008043.21  NP_032069.21 
     AA5917145  AK0156805  (see all 9)
    About this table        Species with no ortholog for FRAT1

    ENSEMBL Gene Tree for FRAT1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for FRAT1 gene
    FRAT22  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    3 NCBI SNPs in FRAT1 are shown
    (Click for Applied Biosystems TaqMan ® Genotyping Assay) (only AB snps)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 10 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs19320021,2
    A,C,F,H99067669(+) AACAGC/GTATTT 1 -- ng514Minor allele frequency- G:0.05EU EA WA 420
    --
    rs37585831,2
    --99067330(+) AGGCTA/GGGCGC 1 -- ng510--------
    --
    rs111891261,2
    --99067570(+) tccagC/Tctggg 1 -- ng510--------
    About this table
    The following additional 22 SNP(s) have been found in Applied Biosystems data source:
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)


     rs12240590 rs34288920 rs3781373 rs4919090 rs11189131 rs11189132 rs35717991
     rs3740514 rs61746141 rs4919088 rs11593801 rs3824786 rs4919087 rs10882898
     rs1334891 rs3740513 rs10786330 rs4919093 rs10786327 rs1334892 rs4919089
     rs10748696

    HapMap Linkage Disequilibrium images for FRAT1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 602503

    3 Novoseek disease relationships for FRAT1 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    lymphoma t-cell 60.58 3 11696357 (1), 15073180 (1), 9034327 (1)
    leukemia 18.84 1 15073180 (1)
    tumors 0.00 14 9034327 (4), 15073180 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/18 PubMed articles for FRAT1 gene (see all 18 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 10023 HGNC: 3944 AceView: FRAT1 Ensembl:ENSG00000165879 euGenes: HUgn10023
    ECgene: FRAT1 H-InvDB: FRAT1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for FRAT1 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for FRAT1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for FRAT1 Antibodies for FRAT1
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
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     Antibodies for FRAT1

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