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Aliases & Descriptions for FRAT1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FLJ97193 2 | | Frat-1 3 | | OTTHUMP00000020201 2 | | OTTHUMP00000059391 2 |
| | | Descriptions |
|---|
| GSK-3 binding protein FRAT1 2 | | frequently rearranged in advanced T-cell lymphomas 2, 3 | | proto-oncogene FRAT1 2 |
|
| | Search outside databases for aliases for FRAT1 genePrevious GC identifers: GC10P097972 GC10P098312 GC10P099210 GC10P098743 |
Summaries for FRAT1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for FRAT1: The protein encoded by this gene belongs to the GSK-3-binding protein family. The protein inhibits GSK-3-mediated phosphorylation of beta-catenin and positively regulates the Wnt signaling pathway. It may function in tumor progression and in lymphomagenesis. [provided by RefSeq] UniProtKB/Swiss-Prot: FRAT1_HUMAN, Q92837Function: Positively regulates the Wnt signaling pathway by stabilizing beta-catenin through the association with GSK-3. May play a role in tumor progression and collaborate with PIM1 and MYC in lymphomagenesisGene Wiki entry for FRAT1 |
Genomic Location for FRAT1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the FRAT1 gene 
Entrez Gene cytogenetic band: 10q24.1 Ensembl cytogenetic band: 10q24.1 HGNC chromosome: 10FRAT1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10P099069:
(about GC identifiers)
Start:
|
99,069,012 bp from pter |
End:
|
99,071,662 bp from pter |
Size:
|
2,651 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000010.9 NT_030059.12
| Proteins for FRAT1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: FRAT1_HUMAN, Q92837 (See
protein sequence)Recommended Name: Proto-oncogene FRAT1 Size: 279 amino acids; 29093 Da
Subunit: Binds DVL1. Binds GSK-3 and prevent GSK-3-dependent phosphorylation
Subcellular location: Cytoplasm
PDB structures from and Proteopedia :1GNG (3D)
 
Secondary accessions: Q5JTI1 Q8NE74 Q8TDW9Post-translational modifications:
Phosphorylated (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005470.2
ENSEMBL proteins: ENSP00000360060
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005737 | cytoplasm |
IEA | -- | About this table
Antibodies for FRAT1: Assays for FRAT1: | Protein
Domains/ Families for FRAT1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q92837
ProtoNet protein and cluster: Q92837 1 Blocks protein family: IPB008014 Glycogen synthase kinase-3 binding protein
UniProtKB/Swiss-Prot: FRAT1_HUMAN, Q92837Similarity: Belongs to the GSK-3-binding protein family | Gene Function for FRAT1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_005479
Applied Biosystems Silencer® siRNAs for FRAT1
Sigma-Aldrich siRNA for FRAT1  Sigma-Aldrich shRNA for FRAT1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005479                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005479                                  untagged cDNA clone in CMV expression vector: NM_005479 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005479
UniProtKB/Swiss-Prot: FRAT1_HUMAN, Q92837Function: Positively regulates the Wnt signaling pathway by stabilizing beta-catenin through the association with GSK-3. May play a role in tumor progression and collaborate with PIM1 and MYC in lymphomagenesis1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Frat1):
| Pathways & Interactions for FRAT1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for FRAT1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for FRAT1 
5/19 Interacting proteins for FRAT1 (ENSP000003600603) via UniProtKB, MINT, and/or STRING (see all 19
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000578 | embryonic axis specification |
IEA | -- | | GO:0016055 | Wnt receptor signaling pathway |
IEA | -- | About this table
|
Drugs & Compounds for FRAT1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for FRAT1 1 Novoseek chemical compound relationship for FRAT1 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| glycogen |
59.31 |
4 |
11696357 (2), 16982607 (2) |
About this table
|
Transcripts for FRAT1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_005479
Sigma-Aldrich siRNA for FRAT1  Sigma-Aldrich shRNA for FRAT1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005479 REFSEQ mRNAs for FRAT1 gene: NM_005479.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005479               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005479                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005479                                  untagged cDNA clone in CMV expression vector: NM_005479  Additional cDNA sequence: AB074890.1 AK307245.1 BC034476.1 U58975.2 2 DOTS entries: DT.402798 DT.75131198 24/44 AceView cDNA sequences (see all 44
):AW044654 CB995777 BF590725 CA430832 AW516905 BQ016991 AA505867 BF057528 BF435283 AI457511 BC034476 AI761616 AB074890 BQ015843 AI470157 AI762217 BM995907 AA906070 BM046320 NM_005479 CD105547 NM_181355 AI685156 BF055357
highest scoring ESTs for FRAT1:AI457511 AA454723 AA454773 AA505867 AA789305 AA888915 AA906070 AB074890 AI470157 AI652791 Unigene Clusters for FRAT1: Frequently rearranged in advanced T-cell lymphomas Hs.126057 [show with all ESTs], Hs.715785 [show with all ESTs]Unigene Representative Sequences: NM_005479, U58975
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000371021
|
Expression for FRAT1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| FRAT1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for FRAT1
1 / 2 / 3 3 probe-sets matching FRAT1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTGAAGTGCT
SOURCE GeneReport for Unigene clusters: Hs.126057 Hs.715785
|
Orthologs for FRAT1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for FRAT1 gene from 3 species
About this table Species with no ortholog for FRAT1
ENSEMBL Gene Tree for FRAT1 | Paralogs for FRAT1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for FRAT1 gene
- FRAT22
|
SNPs/Variants for FRAT1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
The following additional 22 SNP(s) have been
found in Applied Biosystems data source: (Click
for
Applied Biosystems TaqMan ® Genotyping Assay)
HapMap Linkage Disequilibrium images for FRAT1 (up to first 250kb)
|
Disorders & Mutations for FRAT1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602503
3 Novoseek disease relationships for FRAT1 gene
About this table
|
Medical News for FRAT1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for FRAT1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/18 PubMed articles for FRAT1 gene (see all 18
):- Activation of a novel proto-oncogene, Frat1, contributes to progression of mouse T-cell lymphomas. (PubMed id 9034327)1, 2, 3, 4 Jonkers J.... Berns A. (1997)
- Molecular cloning and expression of proto-oncogene FRAT1 in human cancer. (PubMed id 11894125)1, 3, 4 Saitoh T.... Katoh M. (2002)
- Casein kinase I epsilon enhances the binding of Dvl-1 to Frat-1 and is essential for Wnt-3a-induced accumulation of beta-catenin. (PubMed id 12556519)1, 3, 4 Hino S.... Kikuchi A. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)3, 4 Deloukas P.... Rogers J. (2004)
- The structure of phosphorylated GSK-3beta complexed with a peptide, FRATtide, that inhibits beta-catenin phosphorylation. (PubMed id 11738041)3, 4 Bax B....Reith A.D. (2001)
- FRAT1, a substrate-specific regulator of glycogen synthase kinase-3 activity, is a cellular substrate of protein kinase A. (PubMed id 16982607)1, 3 Hagen T....Reith A.D. (2006)
- Tissue microarray analysis of human FRAT1 expression and its correlation with the subcellular localisation of beta-catenin in ovarian tumours. (PubMed id 16479254)1, 3 Wang Y....Xu N. (2006)
- Axin and Frat1 interact with dvl and GSK, bridging Dvl to GSK in Wnt-mediated regulation of LEF-1. (PubMed id 10428961)1, 3 Li L....Wu D. (1999)
- FRAT1 overexpression leads to aberrant activation of beta-catenin/TCF pathway in esophageal squamous cell carcinoma. (PubMed id 18498136)3 Wang Y....Xu N. (2008)
|
Search for FRAT1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing FRAT1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing FRAT1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FRAT1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for FRAT1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for FRAT1:

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Incremental update: 13 Oct 2009
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