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FOXR2 Gene

protein-coding   GIFtS: 41
GCID: GC0XP055666

Forkhead Box R2

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Forkhead Box R21 2
Forkhead Box Protein N62 3
FOXN62 3
Forkhead Box Protein R22

External Ids:    HGNC: 304691   Entrez Gene: 1396282   Ensembl: ENSG000001892997   UniProtKB: Q6PJQ53   

Export aliases for FOXR2 gene to outside databases

Previous GC identifers: GC0XP054590 GC0XP055532 GC0XP052703


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for FOXR2 Gene:
FOXR2 (forkhead box R2) is a protein-coding gene. Diseases associated with FOXR2 include breast cancer. GO annotations related to this gene include double-stranded DNA binding and sequence-specific DNA binding. An important paralog of this gene is FOXF1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000023.11  NC_018934.2  NT_011630.15  
Regulatory elements:
   Regulatory transcription factor binding sites in the FOXR2 gene promoter:
         GR   AML1a   GR-beta   STAT1beta   STAT1alpha   STAT2   FOXO4   FOXO1a   GR-alpha   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidFOXR2 promoter sequence
   Search Chromatin IP Primers for FOXR2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FOXR2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp11.21   Ensembl cytogenetic band:  Xp11.21   HGNC cytogenetic band: Xp11

FOXR2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FOXR2 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP055666:  view genomic region     (about GC identifiers)

Start:
55,649,833 bp from pter      End:
55,652,621 bp from pter
Size:
2,789 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: FOXR2_HUMAN, Q6PJQ5 (See protein sequence)
Recommended Name: Forkhead box protein R2  
Size: 311 amino acids; 35924 Da

Explore the universe of human proteins at neXtProt for FOXR2: NX_Q6PJQ5

REFSEQ proteins: NP_940853.1  
ENSEMBL proteins: 
 ENSP00000427329  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
FOX: Forkhead boxes

2 InterPro protein domains:
 IPR011991 WHTH_DNA-bd_dom
 IPR001766 TF_fork_head

Graphical View of Domain Structure for InterPro Entry Q6PJQ5

ProtoNet protein and cluster: Q6PJQ5

UniProtKB/Swiss-Prot: FOXR2_HUMAN, Q6PJQ5
Similarity: Contains 1 fork-head DNA-binding domain


FOXR2 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): Selected molecular function terms (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003690double-stranded DNA binding IBA--
GO:0003700sequence-specific DNA binding transcription factor activity ----
GO:0003705RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity IBA--
GO:0008134transcription factor binding IBA--
GO:0008301DNA binding, bending IBA--
     
FOXR2 for ontologies           About GeneDecksing


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
FOXR2_HUMAN, Q6PJQ5: Nucleus (Potential)

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--
GO:0005667transcription factor complex IBA--

FOXR2 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FOXR2
Interactions:

    Search GeneGlobe Interaction Network for FOXR2

Gene Ontology (GO): Selected biological process terms (see all 8):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000122negative regulation of transcription from RNA polymerase II promoter IBA--
GO:0006355regulation of transcription, DNA-templated ----
GO:0006366transcription from RNA polymerase II promoter IBA--
GO:0007389pattern specification process IBA--
GO:0009790embryo development IBA--

FOXR2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for FOXR2



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for FOXR2 gene: 
NM_198451.3  

Unigene Cluster for FOXR2:

Forkhead box R2
Hs.364260  [show with all ESTs]
Unigene Representative Sequence: NM_198451
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000339140(uc004duo.3)
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Additional mRNA sequence: BC012934.2 

1 DOTS entry:

DT.91650349 

6 AceView cDNA sequences:

BC012934 BM550294 NM_198451 BG575689 BQ000525 BE093825 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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FOXR2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
FOXR2 Expression
About this image

FOXR2 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

SOURCE GeneReport for Unigene cluster: Hs.364260

UniProtKB/Swiss-Prot: FOXR2_HUMAN, Q6PJQ5
Tissue specificity: Expressed in breast cancer cell lines and primary cancer

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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for FOXR2 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Foxr21 , 5 forkhead box R21, 5 69.6(n)1
56.27(a)1
  X (68.46 cM)5
4362401  NM_001034894.31  NP_001030066.11 
 1531187865 
zebrafish
(Danio rerio)
Actinopterygii FOXR16
forkhead box R1
30(a)
1 → many
5(60147744-60153128) ENSDARG00000004864
fruit fly
(Drosophila melanogaster)
Insecta CHES-1-like6
Checkpoint suppressor homologue
5(a)
1 → many
X(7576371-7603418)


ENSEMBL Gene Tree for FOXR2 (if available)
TreeFam Gene Tree for FOXR2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for FOXR2 gene
FOXF12  FOXQ12  FOXN32  FOXJ12  FOXF22  FOXK12  FOXN42  FOXR12  
FOXH12  FOXK22  FOXN12  FOXJ32  FOXG12  FOXJ22  FOXN22  
1 SIMAP similar gene for FOXR2 using alignment to 1 protein entry:     FOXR2_HUMAN:
FOXR1

FOXR2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for FOXR2 (see all 77)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr X posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1830281271,2
--55665319(+) TATCTC/TTGCTT 1 -- us2k10--------
rs1869515801,2
--55665571(+) CAATAC/TGTAAA 1 -- us2k10--------
rs1504615941,2
--55665572(+) AATACA/GTAAAT 1 -- us2k10--------
rs1381885521,2
--55665577(+) GTAAAC/TATTGA 1 -- us2k10--------
rs1927626631,2
--55665665(+) ACTCTC/TCCAGG 1 -- us2k10--------
rs1849761251,2
--55665757(+) CTCTCC/TGTGGT 1 -- us2k10--------
rs1443001211,2
C--55665907(+) ATGAGC/TAGAGG 1 -- us2k10--------
rs1390315541,2
C--55665988(+) AAAACA/GGGTGT 1 -- us2k10--------
rs1430436431,2
C--55666016(+) ATTTCA/TGTACT 1 -- us2k10--------
rs1890301581,2
--55666095(+) AGATTC/TTGGAG 1 -- us2k10--------

HapMap Linkage Disequilibrium report for FOXR2 (55649833 - 55652621 bp)

Structural Variations
     Database of Genomic Variants (DGV) 4 variations for FOXR2:    About this table    
Variant IDTypeSubtypePubMed ID
esv2740175CNV Deletion23290073
nsv435891CNV Deletion17901297
nsv508776CNV Insertion20534489
nsv524155CNV Gain19592680

Locus Specific Mutation Databases (LSDB): FOXR2

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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1 disease for FOXR2:    
About MalaCards
breast cancer


FOXR2 for disorders           About GeneDecksing


Export disorders for FOXR2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for FOXR2 gene integrated from 10 sources:
(articles sorted by number of sources associating them with FOXR2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification and characterization of human FOXN6, mouse Foxn6, and rat Foxn6 genes in silico. (PubMed id 15202009)1, 2, 3, 9 Katoh M. and Katoh M. (Int. J. Oncol. 2004)
  2. Identification and characterization of human FOXK1 gene in silico. (PubMed id 15202027)1, 3, 9 Katoh M. and Katoh M. (Int. J. Mol. Med. 2004)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  4. A Y2H-seq approach defines the human protein methyltransferase interactome. (PubMed id 23455924)1 Weimann M.... Stelzl U. (Nat. Methods 2013)
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  6. Germ-line mutation of Foxn5 gene in mouse lineage. (PubMed id 15289901)9 Katoh M. and Katoh M. (Int. J. Mol. Med. 2004)
  7. Characterization of human FOXN4 gene in silico. (PubMed id 15492871)9 Katoh M. and Katoh M. (Int. J. Mol. Med. 2004)
  8. Human FOX gene family (Review). (PubMed id 15492844)9 Katoh M. and Katoh M. (Int. J. Oncol. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 139628 HGNC: 30469 AceView: FOXR2 Ensembl:ENSG00000189299 euGenes: HUgn139628
ECgene: FOXR2 H-InvDB: FOXR2

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for FOXR2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for FOXR2 gene:
Search GeneIP for patents involving FOXR2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Antibodies for FOXR2
 ELISAs for FOXR2
 CLIAs for FOXR2



 Browse ESI BIO Cell Lines and PureStem Progenitors for FOXR2
 Gene Synthesis
 Protein Engineering
 Variant Library Synthesis
 Codon Optimization
 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FOXR2
 SwitchGear 3'UTR luciferase reporter plasmids for FOXR2
 SwitchGear Promoter luciferase reporter plasmids for FOXR2
 ThermoFisher Antibodies for FOXR2
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FOXR2
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for FOXR2
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for FOXR2
 LSBio Antibodies in human, mouse, rat for FOXR2
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
 Browse compounds at ApexBio
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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