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Aliases for FOXP1-IT1 Gene

Subcategory (RNA class) for FOXP1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FOXP1-IT1 Gene

  • FOXP1 Intronic Transcript 1 2 3 5
  • FOXP1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FOXP1-IT1 Gene

Summaries for FOXP1-IT1 Gene

GeneCards Summary for FOXP1-IT1 Gene

FOXP1-IT1 (FOXP1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXP1-IT1 Gene

Genomics for FOXP1-IT1 Gene

Regulatory Elements for FOXP1-IT1 Gene

Enhancers for FOXP1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F071575 1.5 FANTOM5 ENCODE 12.7 -6.6 -6638 11.4 PKNOX1 ARID4B SIN3A DMAP1 FOS ZNF263 SP3 SP5 MXD4 KAT8 FOXP1-IT1 MIR1284 EIF4E3 LOC105377155
GH03F071437 2.9 VISTA FANTOM5 Ensembl ENCODE 4.8 +125.9 125895 22.3 ATF1 PKNOX1 ARNT ZFP64 SIN3A FEZF1 YY1 CBX5 FOS REST MIR1284 EIF4E3 FOXP1-IT1 GC03P071415 GC03P071510
GH03F070979 3 VISTA FANTOM5 Ensembl ENCODE 4.6 +591.4 591358 6.4 TBP PKNOX1 FEZF1 ZBTB40 ZNF366 FOS ZNF362 CEBPB REST HDAC8 FOXP1-IT1 GC03P070952 GC03P071037
GH03F071492 1.7 FANTOM5 Ensembl ENCODE 7.1 +78.6 78557 7.8 PKNOX1 ATF1 ARNT ZFP64 SIN3A FEZF1 YY1 ZNF121 GATA2 FOS MIR1284 FOXP1-IT1 EIF4E3 GC03P071510 GC03P071415
GH03F071540 1.4 VISTA Ensembl ENCODE 7.9 +32.1 32108 3.1 PKNOX1 CBX3 ATF1 SIN3A RAD21 ZNF121 GATA2 ZNF366 SCRT2 CREM FOXP1 FOXP1-IT1 MIR1284 LOC105377154
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOXP1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FOXP1-IT1 Gene

Chromosome:
3
Start:
71,570,255 bp from pter
End:
71,574,457 bp from pter
Size:
4,203 bases
Orientation:
Minus strand

Genomic View for FOXP1-IT1 Gene

Genes around FOXP1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXP1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for FOXP1-IT1 Gene

Proteins for FOXP1-IT1 Gene

Post-translational modifications for FOXP1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXP1-IT1 Gene

Domains & Families for FOXP1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXP1-IT1 Gene

Function for FOXP1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXP1-IT1 Gene

Localization for FOXP1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FOXP1-IT1 Gene

Pathways & Interactions for FOXP1-IT1 Gene

SuperPathways for FOXP1-IT1 Gene

No Data Available

Interacting Proteins for FOXP1-IT1 Gene

Gene Ontology (GO) - Biological Process for FOXP1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXP1-IT1 Gene

Transcripts for FOXP1-IT1 Gene

mRNA/cDNA for FOXP1-IT1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXP1-IT1 Gene

FOXP1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXP1-IT1 Gene

No ASD Table

Relevant External Links for FOXP1-IT1 Gene

GeneLoc Exon Structure for
FOXP1-IT1
ECgene alternative splicing isoforms for
FOXP1-IT1

Expression for FOXP1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FOXP1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXP1-IT1 Gene

This gene is overexpressed in Testis (x11.3).

SOURCE GeneReport for Unigene cluster for FOXP1-IT1 Gene:

Hs.655773
genes like me logo Genes that share expression patterns with FOXP1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FOXP1-IT1 Gene

Orthologs for FOXP1-IT1 Gene

Evolution for FOXP1-IT1 Gene

ENSEMBL:
Gene Tree for FOXP1-IT1 (if available)
TreeFam:
Gene Tree for FOXP1-IT1 (if available)

No data available for Orthologs for FOXP1-IT1 Gene

Paralogs for FOXP1-IT1 Gene

No data available for Paralogs for FOXP1-IT1 Gene

Variants for FOXP1-IT1 Gene

Relevant External Links for FOXP1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXP1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FOXP1-IT1 Gene

Disorders for FOXP1-IT1 Gene

Relevant External Links for FOXP1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXP1-IT1

No disorders were found for FOXP1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXP1-IT1 Gene

Publications for FOXP1-IT1 Gene

No publications were found for FOXP1-IT1 Gene.

Products for FOXP1-IT1 Gene

Sources for FOXP1-IT1 Gene

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