Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FOXP1-IT1 Gene

Subcategory (RNA class) for FOXP1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FOXP1-IT1 Gene

  • FOXP1 Intronic Transcript 1 2 3 5
  • FOXP1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FOXP1-IT1 Gene

Summaries for FOXP1-IT1 Gene

GeneCards Summary for FOXP1-IT1 Gene

FOXP1-IT1 (FOXP1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FOXP1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXP1-IT1 Gene

Genomics for FOXP1-IT1 Gene

GeneHancer (GH) Regulatory Elements for FOXP1-IT1 Gene

Promoters and enhancers for FOXP1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I071575 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.7 -6.6 -6638 11.4 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 ZNF143 FOXP1 LOC105377155 FOXP1-IT1 MIR1284 EIF4E3 ENSG00000270562 GC03P071583
GH03I070979 Enhancer 2.3 VISTA UCNEbase FANTOM5 Ensembl ENCODE dbSUPER 4.7 +591.4 591357 6.4 PKNOX1 NEUROD1 SIN3A ZNF366 FOS ZNF362 CEBPB HDAC8 NR2F2 SP1 FOXP1-IT1 GC03P070952 GC03P071037 FOXP1
GH03I071492 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 7.2 +78.5 78516 6.9 ATF1 FOXA2 ARNT ZFP64 ZSCAN4 KLF17 FEZF1 RFX5 ZNF335 ZNF366 MIR1284 FOXP1-IT1 EIF4E3 GC03P071510 GC03P071415 FOXP1
GH03I071541 Promoter/Enhancer 2 VISTA EPDnew Ensembl ENCODE dbSUPER 5.3 +31.8 31807 2.5 ATF1 PKNOX1 TCF12 ZNF121 ATF7 RUNX3 YY2 REST ZNF592 MEF2D FOXP1 MIR1284 FOXP1-IT1 ENSG00000274387 GC03P071510
GH03I071438 Enhancer 2.1 VISTA UCNEbase FANTOM5 Ensembl ENCODE dbSUPER 4.8 +125.2 125194 20.9 PKNOX1 FOXA2 ZBTB40 RAD21 RCOR1 FOS IKZF2 RUNX3 CEBPB ELF1 MIR1284 EIF4E3 FOXP1-IT1 GC03P071415 GC03P071510 FOXP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FOXP1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FOXP1-IT1 Gene

Genomic Locations for FOXP1-IT1 Gene
chr3:71,570,255-71,574,457
(GRCh38/hg38)
Size:
4,203 bases
Orientation:
Minus strand
chr3:71,619,406-71,623,608
(GRCh37/hg19)

Genomic View for FOXP1-IT1 Gene

Genes around FOXP1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXP1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for FOXP1-IT1 Gene

Proteins for FOXP1-IT1 Gene

Post-translational modifications for FOXP1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXP1-IT1 Gene

Domains & Families for FOXP1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXP1-IT1 Gene

Function for FOXP1-IT1 Gene

Phenotypes From GWAS Catalog for FOXP1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXP1-IT1 Gene

Localization for FOXP1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXP1-IT1 Gene

Pathways & Interactions for FOXP1-IT1 Gene

SuperPathways for FOXP1-IT1 Gene

No Data Available

Interacting Proteins for FOXP1-IT1 Gene

Gene Ontology (GO) - Biological Process for FOXP1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXP1-IT1 Gene

Drugs & Compounds for FOXP1-IT1 Gene

No Compound Related Data Available

Transcripts for FOXP1-IT1 Gene

mRNA/cDNA for FOXP1-IT1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXP1-IT1 Gene

FOXP1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FOXP1-IT1 Gene

No ASD Table

Relevant External Links for FOXP1-IT1 Gene

GeneLoc Exon Structure for
FOXP1-IT1
ECgene alternative splicing isoforms for
FOXP1-IT1

Expression for FOXP1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXP1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXP1-IT1 Gene

This gene is overexpressed in Testis (x11.3).

SOURCE GeneReport for Unigene cluster for FOXP1-IT1 Gene:

Hs.655773
genes like me logo Genes that share expression patterns with FOXP1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXP1-IT1 Gene

Orthologs for FOXP1-IT1 Gene

Evolution for FOXP1-IT1 Gene

ENSEMBL:
Gene Tree for FOXP1-IT1 (if available)
TreeFam:
Gene Tree for FOXP1-IT1 (if available)

No data available for Orthologs for FOXP1-IT1 Gene

Paralogs for FOXP1-IT1 Gene

No data available for Paralogs for FOXP1-IT1 Gene

Variants for FOXP1-IT1 Gene

Additional Variant Information for FOXP1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXP1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FOXP1-IT1 Gene

Disorders for FOXP1-IT1 Gene

Additional Disease Information for FOXP1-IT1

No disorders were found for FOXP1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXP1-IT1 Gene

Publications for FOXP1-IT1 Gene

No publications were found for FOXP1-IT1 Gene.

Products for FOXP1-IT1 Gene

Sources for FOXP1-IT1 Gene

Content
Loading form....