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Aliases for FOXP1-AS1 Gene

Subcategory (RNA class) for FOXP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FOXP1-AS1 Gene

  • FOXP1 Antisense RNA 1 2 3 5
  • FOXP1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FOXP1-AS1 Gene

Previous GeneCards Identifiers for FOXP1-AS1 Gene

  • GC00U933113

Summaries for FOXP1-AS1 Gene

GeneCards Summary for FOXP1-AS1 Gene

FOXP1-AS1 (FOXP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXP1-AS1 Gene

Genomics for FOXP1-AS1 Gene

Regulatory Elements for FOXP1-AS1 Gene

Enhancers for FOXP1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F071299 0.5 FANTOM5 0.4 +9.6 9623 0.2 EIF4E3 FOXP1-AS1 GC03M071311
GH03F071302 0.2 ENCODE 0.4 +14.9 14912 3.9 SOX13 CTCF TEAD4 ZNF48 RAD21 YY1 POLR2A ZNF366 PATZ1 SCRT2 GC03M071311 FOXP1-AS1
GH03F071310 0.6 Ensembl 0.3 +19.3 19343 0.2 ZBED1 EED JUNB HMBOX1 CREM GABPA GC03M071311 FOXP1-AS1
GH03F071308 1.2 Ensembl 0.3 +18.7 18743 0.6 SOX13 SCRT1 GFI1B GC03M071311 FOXP1-AS1
GH03F071309 1.1 Ensembl ENCODE 0.3 +20.7 20663 2.0 CTCF ZBED1 MAFG RAD21 GABPA ZNF664 ZNF316 EED MAFK EMSY GC03M071311 FOXP1-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FOXP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FOXP1-AS1 Gene

Chromosome:
3
Start:
71,289,758 bp from pter
End:
71,305,854 bp from pter
Size:
16,097 bases
Orientation:
Plus strand

Genomic View for FOXP1-AS1 Gene

Genes around FOXP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXP1-AS1 Gene

Proteins for FOXP1-AS1 Gene

Post-translational modifications for FOXP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXP1-AS1 Gene

Domains & Families for FOXP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXP1-AS1 Gene

Function for FOXP1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXP1-AS1 Gene

Localization for FOXP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FOXP1-AS1 Gene

Pathways & Interactions for FOXP1-AS1 Gene

SuperPathways for FOXP1-AS1 Gene

No Data Available

Interacting Proteins for FOXP1-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXP1-AS1 Gene

Transcripts for FOXP1-AS1 Gene

mRNA/cDNA for FOXP1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FOXP1-AS1 Gene

No ASD Table

Relevant External Links for FOXP1-AS1 Gene

GeneLoc Exon Structure for
FOXP1-AS1
ECgene alternative splicing isoforms for
FOXP1-AS1

Expression for FOXP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FOXP1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXP1-AS1 Gene

This gene is overexpressed in Testis (x41.2).
genes like me logo Genes that share expression patterns with FOXP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FOXP1-AS1 Gene

Orthologs for FOXP1-AS1 Gene

Evolution for FOXP1-AS1 Gene

ENSEMBL:
Gene Tree for FOXP1-AS1 (if available)
TreeFam:
Gene Tree for FOXP1-AS1 (if available)

No data available for Orthologs for FOXP1-AS1 Gene

Paralogs for FOXP1-AS1 Gene

No data available for Paralogs for FOXP1-AS1 Gene

Variants for FOXP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXP1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10460939 -- 71,290,680(+) TGTTA(C/T)GTTGT intron-variant
rs10460940 -- 71,290,741(+) gctcc(A/G)aaatc intron-variant
rs10511016 -- 71,297,432(+) AAGAA(C/T)GGACA intron-variant
rs10642015 -- 71,293,479(+) TTCTT(-/AA/AAA)AAAAA intron-variant
rs111945176 -- 71,297,907(+) TGGCC(C/T)GTTTA intron-variant

Relevant External Links for FOXP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FOXP1-AS1 Gene

Disorders for FOXP1-AS1 Gene

Relevant External Links for FOXP1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXP1-AS1

No disorders were found for FOXP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXP1-AS1 Gene

Publications for FOXP1-AS1 Gene

No publications were found for FOXP1-AS1 Gene.

Products for FOXP1-AS1 Gene

Sources for FOXP1-AS1 Gene

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