Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FOXN3-AS2 Gene

Subcategory (RNA class) for FOXN3-AS2 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for FOXN3-AS2 Gene

  • FOXN3 Antisense RNA 2 2 3 5
  • FOXN3 Antisense RNA 2 (Non-Protein Coding) 2 3
  • CTD-2303B20.1 3
  • PRO1768 3

External Ids for FOXN3-AS2 Gene

ORGUL Members for FOXN3-AS2 Gene

Previous GeneCards Identifiers for FOXN3-AS2 Gene

  • GC14P090044

Summaries for FOXN3-AS2 Gene

GeneCards Summary for FOXN3-AS2 Gene

FOXN3-AS2 (FOXN3 Antisense RNA 2) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXN3-AS2 Gene

Genomics for FOXN3-AS2 Gene

Regulatory Elements for FOXN3-AS2 Gene

Enhancers for FOXN3-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G089578 0.8 Ensembl ENCODE 0.7 +2.4 2383 0.4 SCRT1 BHLHE40 SCRT2 PRDM10 FOXN3 RN7SKP107 ENSG00000252655 FOXN3-AS2 GC14P089586
GH14G089576 0.7 ENCODE 0.7 +0.9 917 1.9 KLF1 MAX ZIC2 ZFHX2 ZBTB20 EGR2 ZNF263 SP3 MAZ CEBPB RN7SKP107 FOXN3 ENSG00000252655 FOXN3-AS2 GC14P089586
GH14G089539 1.2 Ensembl ENCODE 0.3 -35.5 -35482 2.3 FOXA2 PKNOX1 ZFP64 ARID4B TCF12 GATA2 FOS SP5 MIER2 PPARG ENSG00000252655 FOXN3 RN7SKP107 FOXN3-AS2 GC14P089486
GH14G089509 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -65.5 -65466 2.4 HDGF TBP PKNOX1 MXI1 WRNIP1 ZIC2 ZBTB40 POLR2A EED ZNF143 FOXN3 TDP1 GC14P089486 FOXN3-AS2
GH14G089503 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -71.5 -71511 1.4 CBFB BHLHE40 CBX5 SMARCA4 IKZF1 EED NFE2L2 SPI1 FOXN3 TDP1 GC14P089486 FOXN3-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOXN3-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for FOXN3-AS2 Gene

Chromosome:
14
Start:
89,576,216 bp from pter
End:
89,577,477 bp from pter
Size:
1,262 bases
Orientation:
Plus strand

Genomic View for FOXN3-AS2 Gene

Genes around FOXN3-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXN3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXN3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXN3-AS2 Gene

Proteins for FOXN3-AS2 Gene

Post-translational modifications for FOXN3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXN3-AS2 Gene

Domains & Families for FOXN3-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXN3-AS2 Gene

Function for FOXN3-AS2 Gene

Phenotypes for FOXN3-AS2 Gene

GenomeRNAi human phenotypes for FOXN3-AS2:
genes like me logo Genes that share phenotypes with FOXN3-AS2: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXN3-AS2 Gene

Localization for FOXN3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FOXN3-AS2 Gene

Pathways & Interactions for FOXN3-AS2 Gene

SuperPathways for FOXN3-AS2 Gene

No Data Available

Interacting Proteins for FOXN3-AS2 Gene

Gene Ontology (GO) - Biological Process for FOXN3-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXN3-AS2 Gene

Transcripts for FOXN3-AS2 Gene

mRNA/cDNA for FOXN3-AS2 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXN3-AS2 Gene

FOXN3 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXN3-AS2 Gene

No ASD Table

Relevant External Links for FOXN3-AS2 Gene

GeneLoc Exon Structure for
FOXN3-AS2
ECgene alternative splicing isoforms for
FOXN3-AS2

Expression for FOXN3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXN3-AS2 Gene

SOURCE GeneReport for Unigene cluster for FOXN3-AS2 Gene:

Hs.673124
genes like me logo Genes that share expression patterns with FOXN3-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXN3-AS2 Gene

Orthologs for FOXN3-AS2 Gene

Evolution for FOXN3-AS2 Gene

ENSEMBL:
Gene Tree for FOXN3-AS2 (if available)
TreeFam:
Gene Tree for FOXN3-AS2 (if available)

No data available for Orthologs for FOXN3-AS2 Gene

Paralogs for FOXN3-AS2 Gene

No data available for Paralogs for FOXN3-AS2 Gene

Variants for FOXN3-AS2 Gene

Sequence variations from dbSNP and Humsavar for FOXN3-AS2 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000472693 -- 89,575,911(+) CTGGG(A/G)ACCAG intron-variant, upstream-variant-2KB
rs1000532734 -- 89,575,716(+) CCAAA(C/T)CAGAG intron-variant, upstream-variant-2KB
rs1001691071 -- 89,576,245(+) GCTTT(C/T)GCAGA intron-variant, nc-transcript-variant
rs1003366525 -- 89,577,842(+) CACAA(C/T)GGTGA intron-variant, downstream-variant-500B
rs1003592511 -- 89,576,857(+) CTCAG(C/T)AGTCA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FOXN3-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3635294 CNV gain 21293372
nsv1039774 CNV loss 25217958

Relevant External Links for FOXN3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXN3-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXN3-AS2 Gene

Disorders for FOXN3-AS2 Gene

Relevant External Links for FOXN3-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXN3-AS2

No disorders were found for FOXN3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXN3-AS2 Gene

Publications for FOXN3-AS2 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  2. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FOXN3-AS2 Gene

Sources for FOXN3-AS2 Gene

Content
Loading form....