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Aliases for FOXN3-AS1 Gene

Subcategory (RNA class) for FOXN3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FOXN3-AS1 Gene

  • FOXN3 Antisense RNA 1 2 3 5
  • FOXN3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FOXN3-AS1 Gene

Previous GeneCards Identifiers for FOXN3-AS1 Gene

  • GC14P089883

Summaries for FOXN3-AS1 Gene

GeneCards Summary for FOXN3-AS1 Gene

FOXN3-AS1 (FOXN3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXN3-AS1 Gene

Genomics for FOXN3-AS1 Gene

Regulatory Elements for FOXN3-AS1 Gene

Enhancers for FOXN3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G089425 1.9 FANTOM5 Ensembl ENCODE dbSUPER 5.2 +11.6 11634 7.5 PKNOX1 ZNF133 FEZF1 YY1 ELK1 CBX5 FOS JUNB TSHZ1 TBX21 FOXN3 RN7SKP107 ENSG00000252655 FOXN3-AS1 GC14P089486
GH14G089422 1 Ensembl ENCODE dbSUPER 4.8 +5.4 5439 1.1 HMBOX1 HNF4A RAD21 PRDM1 ENSG00000252655 FOXN3-AS1 GC14P089486
GH14G089414 1.6 FANTOM5 ENCODE dbSUPER 0.7 -0.2 -234 4.7 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 ZNF207 ENSG00000252655 FOXN3 LOC105370614 FOXN3-AS1 ENSG00000258380
GH14G089407 1.3 Ensembl ENCODE dbSUPER 0.4 -8.3 -8309 4.1 MAX FEZF1 RAD21 ZBTB7B POLR2A PATZ1 SCRT2 ZNF600 HLF NR2F2 FOXN3 RN7SKP107 LOC105370614 FOXN3-AS1 ENSG00000258380
GH14G089458 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +41.8 41815 2.3 SOX13 FOXA2 SAP130 MAX DMAP1 ZNF384 CEBPG RAD21 ZNF7 YY1 FOXN3 RN7SKP107 GC14P089486 FOXN3-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOXN3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FOXN3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000071834 -454 2601 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 ZNF207

Genomic Location for FOXN3-AS1 Gene

Chromosome:
14
Start:
89,417,354 bp from pter
End:
89,419,793 bp from pter
Size:
2,440 bases
Orientation:
Plus strand

Genomic View for FOXN3-AS1 Gene

Genes around FOXN3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXN3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXN3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXN3-AS1 Gene

Proteins for FOXN3-AS1 Gene

Post-translational modifications for FOXN3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXN3-AS1 Gene

Domains & Families for FOXN3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXN3-AS1 Gene

Function for FOXN3-AS1 Gene

Phenotypes for FOXN3-AS1 Gene

GenomeRNAi human phenotypes for FOXN3-AS1:
genes like me logo Genes that share phenotypes with FOXN3-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXN3-AS1 Gene

Localization for FOXN3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FOXN3-AS1 Gene

Pathways & Interactions for FOXN3-AS1 Gene

SuperPathways for FOXN3-AS1 Gene

No Data Available

Interacting Proteins for FOXN3-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXN3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXN3-AS1 Gene

Drugs & Compounds for FOXN3-AS1 Gene

No Compound Related Data Available

Transcripts for FOXN3-AS1 Gene

mRNA/cDNA for FOXN3-AS1 Gene

(3) Additional mRNA sequences :
(78) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXN3-AS1 Gene

FOXN3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXN3-AS1 Gene

No ASD Table

Relevant External Links for FOXN3-AS1 Gene

GeneLoc Exon Structure for
FOXN3-AS1
ECgene alternative splicing isoforms for
FOXN3-AS1

Expression for FOXN3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXN3-AS1 Gene

SOURCE GeneReport for Unigene cluster for FOXN3-AS1 Gene:

Hs.585207
genes like me logo Genes that share expression patterns with FOXN3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXN3-AS1 Gene

Orthologs for FOXN3-AS1 Gene

Evolution for FOXN3-AS1 Gene

ENSEMBL:
Gene Tree for FOXN3-AS1 (if available)
TreeFam:
Gene Tree for FOXN3-AS1 (if available)

No data available for Orthologs for FOXN3-AS1 Gene

Paralogs for FOXN3-AS1 Gene

No data available for Paralogs for FOXN3-AS1 Gene

Variants for FOXN3-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXN3-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000360552 -- 89,417,377(+) GGCGG(A/G)CCCTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1003474340 -- 89,415,817(+) AGTTA(C/T)TCACT intron-variant, upstream-variant-2KB
rs1003618368 -- 89,416,074(+) TCCCA(C/G)AGCCG intron-variant, upstream-variant-2KB
rs1003816583 -- 89,418,902(+) CCTTA(-/CATCTTCCTCTTC)CATCT intron-variant, upstream-variant-2KB
rs1004650251 -- 89,415,406(+) GGTTT(C/T)AGGAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FOXN3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1120n106 CNV deletion 24896259
esv27509 CNV loss 19812545
esv3635294 CNV gain 21293372
nsv1069811 CNV deletion 25765185
nsv832852 CNV gain 17160897

Relevant External Links for FOXN3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXN3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXN3-AS1 Gene

Disorders for FOXN3-AS1 Gene

Relevant External Links for FOXN3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXN3-AS1

No disorders were found for FOXN3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXN3-AS1 Gene

Publications for FOXN3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FOXN3-AS1 Gene

Sources for FOXN3-AS1 Gene

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