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Aliases for FOXJ1 Gene

Aliases for FOXJ1 Gene

  • Forkhead Box J1 2 3 5
  • Hepatocyte Nuclear Factor 3 Forkhead Homolog 4 3 4
  • Forkhead-Related Protein FKHL13 3 4
  • FKHL13 3 4
  • HFH-4 3 4
  • HFH4 3 4
  • Forkhead Transcription Factor HFH-4 3
  • Forkhead Box Protein J1 3
  • Fork Head Homologue 4 3
  • Forkhead-Like 13 3

External Ids for FOXJ1 Gene

Previous HGNC Symbols for FOXJ1 Gene

  • FKHL13

Previous GeneCards Identifiers for FOXJ1 Gene

  • GC17M073990
  • GC17M077124
  • GC17M074596
  • GC17M074729
  • GC17M071644
  • GC17M074132
  • GC17M069561

Summaries for FOXJ1 Gene

Entrez Gene Summary for FOXJ1 Gene

  • This gene encodes a member of the forkhead family of transcription factors. Similar genes in zebrafish and mouse have been shown to regulate the transcription of genes that control the production of motile cilia. The mouse ortholog also functions in the determination of left-right asymmetry. Polymorphisms in this gene are associated with systemic lupus erythematosus and allergic rhinitis.[provided by RefSeq, Sep 2009]

GeneCards Summary for FOXJ1 Gene

FOXJ1 (Forkhead Box J1) is a Protein Coding gene. Diseases associated with FOXJ1 include Allergic Rhinitis and Rhinitis. Among its related pathways are Embryonic and Induced Pluripotent Stem Cell Differentiation Pathways and Lineage-specific Markers. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and RNA polymerase II transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is FOXK2.

UniProtKB/Swiss-Prot for FOXJ1 Gene

  • Transcription factor required for motile ciliogenesis.

Gene Wiki entry for FOXJ1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXJ1 Gene

Genomics for FOXJ1 Gene

Regulatory Elements for FOXJ1 Gene

Enhancers for FOXJ1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G076258 2 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -126.7 -126677 19.6 AGO1 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 MEF2D ZNF610 ZNF585B RNF157 QRICH2 ENSG00000267342 UBALD2 ENSG00000267546 PRPSAP1 CASKIN2 FOXJ1 EXOC7 PRCD
GH17G076250 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -110.9 -110886 3.1 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 RNF157 FOXJ1 JMJD6 UNC13D UBALD2 H3F3B RHBDF2 ACOX1 WBP2 ST6GALNAC2
GH17G076131 1.6 FANTOM5 Ensembl ENCODE 12.7 +8.8 8837 1.7 ELF3 ZSCAN4 ARID4B DMAP1 RAD21 THRB ZNF48 RARA ETS1 SLC30A9 FOXJ1 RNF157-AS1 RECQL5 LOC101928447 GC17M076123
GH17G076190 1.4 FANTOM5 Ensembl ENCODE 12.2 -50.7 -50735 2.4 TBP TBL1XR1 FEZF1 ZBTB40 RELA ARID3A POLR2A FOXK2 RELB ETV6 RNF157 FOXJ1 EXOC7 AANAT UBE2O RNF157-AS1 UBALD2 ATP5LP6 GC17P076168
GH17G076181 1.3 Ensembl ENCODE 12.3 -41.0 -41015 0.7 HDGF ATF1 MLX ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 FOXJ1 RNF157 EXOC7 SPHK1 RNF157-AS1 GC17P076168 ATP5LP6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOXJ1 on UCSC Golden Path with GeneCards custom track

Promoters for FOXJ1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000098514 -101 401 PKNOX1 AGO1 ZFP64 ARID4B SIN3A ZNF2 ZNF48 ZNF121 GLIS2 FOS

Genomic Location for FOXJ1 Gene

Chromosome:
17
Start:
76,136,333 bp from pter
End:
76,141,299 bp from pter
Size:
4,967 bases
Orientation:
Minus strand

Genomic View for FOXJ1 Gene

Genes around FOXJ1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXJ1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXJ1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXJ1 Gene

Proteins for FOXJ1 Gene

  • Protein details for FOXJ1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92949-FOXJ1_HUMAN
    Recommended name:
    Forkhead box protein J1
    Protein Accession:
    Q92949
    Secondary Accessions:
    • O00630

    Protein attributes for FOXJ1 Gene

    Size:
    421 amino acids
    Molecular mass:
    45247 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FOXJ1 Gene

Post-translational modifications for FOXJ1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FOXJ1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FOXJ1 Gene

Domains & Families for FOXJ1 Gene

Gene Families for FOXJ1 Gene

Protein Domains for FOXJ1 Gene

Suggested Antigen Peptide Sequences for FOXJ1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FOXJ1: view

No data available for UniProtKB/Swiss-Prot for FOXJ1 Gene

Function for FOXJ1 Gene

Molecular function for FOXJ1 Gene

GENATLAS Biochemistry:
transcription factor-like 13,with a Drosophila homeo forkhead DNA binding domain,mouse hepatocyte nuclear factor 3 homolog,expression confined to cilia/flagella producing cells
UniProtKB/Swiss-Prot Function:
Transcription factor required for motile ciliogenesis.

Gene Ontology (GO) - Molecular Function for FOXJ1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000976 transcription regulatory region sequence-specific DNA binding IDA 9096351
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding IEA --
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA --
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding IEA,ISS --
GO:0003677 DNA binding NAS 9073514
genes like me logo Genes that share ontologies with FOXJ1: view
genes like me logo Genes that share phenotypes with FOXJ1: view

Animal Models for FOXJ1 Gene

MGI Knock Outs for FOXJ1:

Animal Model Products

CRISPR Products

miRNA for FOXJ1 Gene

miRTarBase miRNAs that target FOXJ1

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FOXJ1 Gene

Localization for FOXJ1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FOXJ1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FOXJ1 gene
Compartment Confidence
nucleus 5
cytoskeleton 2
extracellular 1

Gene Ontology (GO) - Cellular Components for FOXJ1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 17008636
genes like me logo Genes that share ontologies with FOXJ1: view

Pathways & Interactions for FOXJ1 Gene

genes like me logo Genes that share pathways with FOXJ1: view

Pathways by source for FOXJ1 Gene

Gene Ontology (GO) - Biological Process for FOXJ1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter ISS --
GO:0002508 central tolerance induction ISS --
GO:0002635 negative regulation of germinal center formation ISS --
GO:0002897 positive regulation of central B cell tolerance induction ISS --
GO:0002924 negative regulation of humoral immune response mediated by circulating immunoglobulin ISS --
genes like me logo Genes that share ontologies with FOXJ1: view

No data available for SIGNOR curated interactions for FOXJ1 Gene

Drugs & Compounds for FOXJ1 Gene

No Compound Related Data Available

Transcripts for FOXJ1 Gene

mRNA/cDNA for FOXJ1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(68) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXJ1 Gene

Forkhead box J1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FOXJ1 Gene

No ASD Table

Relevant External Links for FOXJ1 Gene

GeneLoc Exon Structure for
FOXJ1
ECgene alternative splicing isoforms for
FOXJ1

Expression for FOXJ1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXJ1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXJ1 Gene

This gene is overexpressed in Fallopian Tube (x9.2), Testis (x7.5), Cervix - Endocervix (x6.7), Brain - Caudate (basal ganglia) (x4.1), and Brain - Hypothalamus (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of FOXJ1 Gene:

FOXJ1

SOURCE GeneReport for Unigene cluster for FOXJ1 Gene:

Hs.651204

mRNA Expression by UniProt/SwissProt for FOXJ1 Gene:

Q92949-FOXJ1_HUMAN
Tissue specificity: Testis, oviduct, lung and brain cortex.

Evidence on tissue expression from TISSUES for FOXJ1 Gene

  • Lung(4.5)
  • Nervous system(4.3)
genes like me logo Genes that share expression patterns with FOXJ1: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXJ1 Gene

Orthologs for FOXJ1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for FOXJ1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FOXJ1 34 35
  • 99.52 (n)
cow
(Bos Taurus)
Mammalia FOXJ1 34 35
  • 93.27 (n)
dog
(Canis familiaris)
Mammalia FOXJ1 34 35
  • 91.69 (n)
oppossum
(Monodelphis domestica)
Mammalia FOXJ1 35
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Foxj1 34 16 35
  • 88.04 (n)
rat
(Rattus norvegicus)
Mammalia Foxj1 34
  • 87.97 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia FOXJ1 35
  • 86 (a)
OneToOne
chicken
(Gallus gallus)
Aves FOXJ1 34
  • 71.06 (n)
lizard
(Anolis carolinensis)
Reptilia FOXJ1 35
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia foxj1 34
  • 66.26 (n)
Str.533 34
African clawed frog
(Xenopus laevis)
Amphibia foxJ1 34
zebrafish
(Danio rerio)
Actinopterygii foxj1a 34 35
  • 63.07 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes FKH1 35
  • 13 (a)
ManyToMany
FKH2 35 37
  • 11 (a)
ManyToMany
Species where no ortholog for FOXJ1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FOXJ1 Gene

ENSEMBL:
Gene Tree for FOXJ1 (if available)
TreeFam:
Gene Tree for FOXJ1 (if available)

Paralogs for FOXJ1 Gene

genes like me logo Genes that share paralogs with FOXJ1: view

Variants for FOXJ1 Gene

Sequence variations from dbSNP and Humsavar for FOXJ1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1001034644 -- 76,139,201(+) AGTGT(C/G)GTAGG intron-variant, upstream-variant-2KB
rs1001973705 -- 76,139,273(+) GCGGG(C/G)GTTGG intron-variant, upstream-variant-2KB
rs1002499625 -- 76,138,437(+) CTGCC(A/G)CTGAC intron-variant
rs1002573079 -- 76,138,265(+) TGCCC(A/G)GGCGG intron-variant
rs1002712683 -- 76,143,011(+) AAAAG(G/T)GTTGG intron-variant, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FOXJ1 Gene

Variant ID Type Subtype PubMed ID
nsv833546 CNV loss 17160897

Variation tolerance for FOXJ1 Gene

Residual Variation Intolerance Score: 85.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.09; 38.21% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FOXJ1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXJ1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FOXJ1 Gene

Disorders for FOXJ1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for FOXJ1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
allergic rhinitis
  • atopic rhinitis
rhinitis
  • runny nose
primary ciliary dyskinesia
  • ciliary motility disorder
visceral heterotaxy
  • heterotaxia
kartagener syndrome
  • kartagener's syndrome
- elite association - COSMIC cancer census association via MalaCards
Search FOXJ1 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

FOXJ1_HUMAN
  • Allergic rhinitis (ALRH) [MIM:607154]: A common disease with complex inheritance characterized by mucosal inflammation caused by allergen exposure. Note=Disease susceptibility may be associated with variations affecting the gene represented in this entry.

Relevant External Links for FOXJ1

Genetic Association Database (GAD)
FOXJ1
Human Genome Epidemiology (HuGE) Navigator
FOXJ1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXJ1
genes like me logo Genes that share disorders with FOXJ1: view

No data available for Genatlas for FOXJ1 Gene

Publications for FOXJ1 Gene

  1. Identification of single nucleotide polymorphisms in FOXJ1 and their association with allergic rhinitis. (PMID: 16518568) Li C.-S. … Chung H.-T. (J. Hum. Genet. 2006) 2 3 4 46 64
  2. The human hepatocyte nuclear factor 3/fork head gene FKHL13: genomic structure and pattern of expression. (PMID: 9073514) Murphy D.B. … Thies U. (Genomics 1997) 2 3 4 22 64
  3. A human forkhead/winged-helix transcription factor expressed in developing pulmonary and renal epithelium. (PMID: 9530170) Pelletier G.J. … Hackett B.P. (Am. J. Physiol. 1998) 3 4 22 64
  4. Association of FOXJ1 polymorphisms with systemic lupus erythematosus and rheumatoid arthritis in Korean population. (PMID: 18160851) Li C.S. … Chae S.C. (Exp. Mol. Med. 2007) 3 46 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for FOXJ1 Gene

Sources for FOXJ1 Gene

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