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FOXI3 Gene

protein-coding   GIFtS: 31
GCID: GC02M088747

Forkhead Box I3

  Search for FOXI3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Forkhead Box I31 2
Forkhead Box Protein I32

External Ids:    HGNC: 351231   Entrez Gene: 3441672   Ensembl: ENSG000002143367   OMIM: 6123515   UniProtKB: A8MTJ63   

Export aliases for FOXI3 gene to outside databases

Previous GC identifers: GC02M088520 GC02M087669


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for FOXI3 Gene:
FOXI3 (forkhead box I3) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding and sequence-specific DNA binding transcription factor activity.

UniProtKB/Swiss-Prot: FOXI3_HUMAN, A8MTJ6
Function: Possible transcriptional factor (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the FOXI3 gene promoter:
         HOXA9B   COUP-TF1   Elk-1   COUP   HNF-4alpha2   HNF-4alpha1   Evi-1   PPAR-gamma1   COUP-TF   PPAR-gamma2   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FOXI3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p11.2   Ensembl cytogenetic band:  2p11.2   HGNC cytogenetic band: 2p11.2

FOXI3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FOXI3 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M088747:  view genomic region     (about GC identifiers)

Start:
88,747,726 bp from pter      End:
88,752,131 bp from pter
Size:
4,406 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: FOXI3_HUMAN, A8MTJ6 (See protein sequence)
Recommended Name: Forkhead box protein I3  
Size: 420 amino acids; 43326 Da
Secondary accessions: B5RI09

Explore the universe of human proteins at neXtProt for FOXI3: NX_A8MTJ6

REFSEQ proteins: NP_001129121.1  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro protein domains:
 IPR011991 WHTH_DNA-bd_dom
 IPR018122 TF_fork_head_CS
 IPR001766 TF_fork_head

Graphical View of Domain Structure for InterPro Entry A8MTJ6

ProtoNet protein and cluster: A8MTJ6

UniProtKB/Swiss-Prot: FOXI3_HUMAN, A8MTJ6
Similarity: Contains 1 fork-head DNA-binding domain


FOXI3 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: FOXI3_HUMAN, A8MTJ6
Function: Possible transcriptional factor (By similarity)

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003700sequence-specific DNA binding transcription factor activity IEA--
GO:0043565sequence-specific DNA binding IEA--
     
FOXI3 for ontologies           About GeneDecksing


Phenotypes:
     1 GenomeRNAi human phenotype for FOXI3:
 Elongated cells 

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
FOXI3_HUMAN, A8MTJ6: Nucleus (Probable)

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--

FOXI3 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FOXI3
Interactions:

    Search GeneGlobe Interaction Network for FOXI3

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-templated IEA--

FOXI3 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for FOXI3



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for FOXI3 gene: 
NM_001135649.1  

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000398142(processed_transcript) ENST00000428390(processed_transcript)
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1 AceView cDNA sequence:

AA349674 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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FOXI3 expression in normal human tissues (normalized intensities)      FOXI3 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GTGAACAGCC
FOXI3 Expression
About this image


FOXI3 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Epiblast (Early Embryonic Tissues)
         Epiblast Stem Cell line 5
 
 Intermediate Mesoderm (Gastrulation Derivatives)
         Intermediate mesoderm-like cells
FOXI3 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for FOXI3 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Foxi31 , 5 forkhead box I31, 5 79.55(n)1
75.76(a)1
  6 (32.14 cM)5
2320771  NM_001101464.11  NP_001094934.11 
 709565315 
chicken
(Gallus gallus)
Aves FOXI31 forkhead box I3 65.84(n)
59.57(a)
  428801  XM_426357.4  XP_426357.4 
tropical clawed frog
(Xenopus tropicalis)
Amphibia foxi4.11 forkhead box I4, gene 1 61.17(n)
62.17(a)
  549541  NM_001016787.2  NP_001016787.1 
zebrafish
(Danio rerio)
Actinopterygii foxi22 forkhead box I2 72.96(n)   387256  AY331582.1 


ENSEMBL Gene Tree for FOXI3 (if available)
TreeFam Gene Tree for FOXI3 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for FOXI3 gene
6 SIMAP similar genes for FOXI3 using alignment to 1 protein entry:     FOXI3_HUMAN:
FOXC1    FOXI1    FOXB1    FOXS1    FOXI2    FOXL2

FOXI3 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for FOXI3 (see all 100)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs621597601,2
C--88747281(+) AGCCTT/CCTACT 1 -- ds50012Minor allele frequency- C:0.07NA 122
rs1131321521,2
C--88747365(+) TTGTGT/-TTTTT 1 -- ds50011Minor allele frequency- -:0.50CSA 2
rs1816159351,2
--88747615(+) AACTCA/GACAGA 1 -- ds50010--------
rs1387300581,2
--88747676(+) CTAATC/TAGCAT 1 -- ds50010--------
rs1856946141,2
C--88747688(+) TGTGCA/GCGCCT 1 -- ds50010--------
rs1922957471,2
--88747739(+) CGGAGA/CCCTCT 2 G V mis10--------
rs2008900461,2
C--88747963(+) CCCTGA/GATCCC 2 I syn10--------
rs756213791,2
C--88748234(+) TCCCAC/GCAGCC 2 A G mis10--------
rs1823212401,2
--88748282(+) GCTTCC/TGACGG 2 Q R mis10--------
rs1873431621,2
--88748356(+) GAGAAA/GATGAG 1 -- int10--------

HapMap Linkage Disequilibrium report for FOXI3 (88747726 - 88752131 bp)

Structural Variations
     Database of Genomic Variants (DGV) 3 variations for FOXI3:    About this table    
Variant IDTypeSubtypePubMed ID
dgv61n16CNV Deletion17901297
nsv458596CNV Gain19166990
nsv470476CNV Gain18288195

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 612351    OMIM disorders: --


FOXI3 for disorders           About GeneDecksing


Export disorders for FOXI3 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for FOXI3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with FOXI3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. A mutation in hairless dogs implicates FOXI3 in ectodermal development. (PubMed id 18787161)1, 2, 3 Droegemueller C.... Leeb T. (Science 2008)
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W.... Wilson R.K. (Nature 2005)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 344167 HGNC: 35123 AceView: LOC344167 Ensembl:ENSG00000214336 euGenes: HUgn344167
ECgene: FOXI3 H-InvDB: FOXI3

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for FOXI3 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for FOXI3 gene:
Search GeneIP for patents involving FOXI3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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