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FOXI2 Gene

protein-coding   GIFtS: 38
GCID: GC10P129535

Forkhead Box I2

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Forkhead Box I21 2
Forkhead Box Protein I22
Homolog Of Mouse Foxi22

External Ids:    HGNC: 324481   Entrez Gene: 3998232   Ensembl: ENSG000001867667   UniProtKB: Q6ZQN53   

Export aliases for FOXI2 gene to outside databases

Previous GC identifers: GC10P129427 GC10P123109


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for FOXI2 Gene:
FOXI2 (forkhead box I2) is a protein-coding gene. GO annotations related to this gene include double-stranded DNA binding and sequence-specific DNA binding. An important paralog of this gene is FOXA2.

UniProtKB/Swiss-Prot: FOXI2_HUMAN, Q6ZQN5
Function: Possible transcriptional activator (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000010.10  NC_018921.2  NT_030059.14  
Regulatory elements:
   Regulatory transcription factor binding sites in the FOXI2 gene promoter:
         STAT5B   STAT1   STAT4   STAT1beta   STAT5A   NF-kappaB   STAT1alpha   STAT2   STAT3   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidFOXI2 promoter sequence
   Search Chromatin IP Primers for FOXI2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FOXI2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q26.2   Ensembl cytogenetic band:  10q26.2   HGNC cytogenetic band: 10q26.2

FOXI2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FOXI2 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P129535:  view genomic region     (about GC identifiers)

Start:
129,535,499 bp from pter      End:
129,539,450 bp from pter
Size:
3,952 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: FOXI2_HUMAN, Q6ZQN5 (See protein sequence)
Recommended Name: Forkhead box protein I2  
Size: 318 amino acids; 32979 Da

Explore the universe of human proteins at neXtProt for FOXI2: NX_Q6ZQN5

Explore proteomics data for FOXI2 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See FOXI2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_997309.2  
    ENSEMBL proteins: 
     ENSP00000373572  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    FOX: Forkhead boxes

    3 InterPro protein domains:
     IPR011991 WHTH_DNA-bd_dom
     IPR018122 TF_fork_head_CS
     IPR001766 TF_fork_head

    Graphical View of Domain Structure for InterPro Entry Q6ZQN5

    ProtoNet protein and cluster: Q6ZQN5

    UniProtKB/Swiss-Prot: FOXI2_HUMAN, Q6ZQN5
    Similarity: Contains 1 fork-head DNA-binding domain


    Find genes that share domains with FOXI2           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: FOXI2_HUMAN, Q6ZQN5
    Function: Possible transcriptional activator (By similarity)

         Gene Ontology (GO): Selected molecular function terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003690double-stranded DNA binding IBA--
    GO:0003700sequence-specific DNA binding transcription factor activity ----
    GO:0003705RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity IBA--
    GO:0008134transcription factor binding IBA--
    GO:0008301DNA binding, bending IBA--
         
    Find genes that share ontologies with FOXI2           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for FOXI2

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    hsa-miR-362-3p hsa-miR-1236 hsa-miR-329 hsa-miR-3670
    SwitchGear 3'UTR luciferase reporter plasmidFOXI2 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    FOXI2_HUMAN, Q6ZQN5: Nucleus (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus4
    cytosol2

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--
    GO:0005667transcription factor complex IBA--

    Find genes that share ontologies with FOXI2           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FOXI2
    Interactions:

        Search GeneGlobe Interaction Network for FOXI2

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for FOXI2 (ENSP000003735724) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NF2ENSP000003446664STRING: ENSP00000344666
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122negative regulation of transcription from RNA polymerase II promoter IBA--
    GO:0006355regulation of transcription, DNA-templated ----
    GO:0006366transcription from RNA polymerase II promoter IBA--
    GO:0007389pattern specification process IBA--
    GO:0009653anatomical structure morphogenesis IBA--

    Find genes that share ontologies with FOXI2           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for FOXI2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for FOXI2 gene: 
    NM_207426.2  

    Unigene Cluster for FOXI2:

    Forkhead box I2
    Hs.449674  [show with all ESTs]
    Unigene Representative Sequence: NM_207426
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000388920(uc009yas.2)
    miRNA
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    hsa-miR-362-3p hsa-miR-1236 hsa-miR-329 hsa-miR-3670
    SwitchGear 3'UTR luciferase reporter plasmidFOXI2 3' UTR sequence
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat FOXI2
      QuantiFast Probe-based Assays in human, mouse, rat FOXI2

    Additional mRNA sequence: 

    AK128865.1 BC137296.1 BC137297.1 

    1 DOTS entry:

    DT.86848635 

    5 AceView cDNA sequences:

    AW299481 AW611868 AK128865 NM_207426 AA302650 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    FOXI2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    FOXI2 Expression
    About this image


    FOXI2 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 2) fully expand
     
     Brain (Nervous System)    fully expand to see all 13 entries
             Thalamus
             Septum   
     
     Kidney (Urinary System)
             Interstitial Stroma
    FOXI2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    FOXI2 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.449674
        Custom PCR Arrays for FOXI2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FOXI2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for FOXI2 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Foxi21 , 5 forkhead box I21, 5 77.49(n)1
    73.63(a)1
      7 (81.27 cM)5
    2700041  NM_183193.21  NP_899016.11 
     1354103675 
    chicken
    (Gallus gallus)
    Aves FOXI26
    forkhead box I2
    39(a)
    1 ↔ 1
    4(85595844-85600029)
    lizard
    (Anolis carolinensis)
    Reptilia FOXI26
    forkhead box I2
    45(a)
    1 ↔ 1
    3(53682394-53691492)
    zebrafish
    (Danio rerio)
    Actinopterygii foxi16
    forkhead box i1
    36(a)
    1 ↔ 1
    16(2302274-2304041) ENSDARG00000019659
    fruit fly
    (Drosophila melanogaster)
    Insecta croc6
    crocodile
    16(a)
    1 → many
    3L(21467233-21469579)


    ENSEMBL Gene Tree for FOXI2 (if available)
    TreeFam Gene Tree for FOXI2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for FOXI2 gene
    FOXA22  FOXD4L12  FOXC22  FOXB12  FOXE32  FOXC12  FOXD4L22  FOXD4L32  
    FOXA32  FOXD4L52  FOXD12  FOXD32  FOXD4L42  FOXA12  FOXE12  FOXL12  
    FOXB22  FOXI12  FOXD4L62  FOXS12  FOXD22  FOXL22  FOXD42  
    10 SIMAP similar genes for FOXI2 using alignment to 2 protein entries:     FOXI2_HUMAN (see all proteins):
    FOXS1    FOXI1    FOXN4    FOXC1    FOXB1    FOXD1
    FOXL1    FOXI3    FOXA1    FOXL2

    Find genes that share paralogs with FOXI2           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for FOXI2 (see all 142)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1443549071,2
    --129537443(+) CCAGGA/CGACCT 1 -- ut310--------
    rs18870061,2
    C,A,H--129537454(-) GGAGGC/TTCCGA 1 -- ut3112Minor allele frequency- T:0.03NA WA CSA EA 374
    rs78979301,2
    C--129537474(+) CTCTAA/TGTCCA 1 -- ut310--------
    rs1121903371,2
    C,F--129537483(+) CAGCCG/ACCCTG 1 -- ut311Minor allele frequency- A:0.50CSA 2
    rs1422662531,2
    C--129537533(+) GGGGCA/GGCGGG 1 -- ut310--------
    rs1463838201,2
    --129537699(+) TGCTTC/TAGGGA 1 -- ut310--------
    rs1142880881,2
    C,F--129537756(+) GGCTCC/AAGGTG 1 -- ut311Minor allele frequency- A:0.03WA 118
    rs728431541,2
    C--129537821(+) AGGAAG/AGTCTT 1 -- ut314Minor allele frequency- A:0.17CSA WA NA 241
    rs728431551,2
    C,F--129537930(+) TCCTTG/CATGAC 1 -- ut313Minor allele frequency- C:0.16CSA WA NA 240
    rs1838021241,2
    --129538022(+) AGGGTC/GCAGGT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for FOXI2 (129535499 - 129539450 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for FOXI2:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2743284CNV Deletion23290073
    esv24992CNV Gain19812545

    Site Specific Mutation Identification with PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for FOXI2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with FOXI2           About GenesLikeMe

    Genetic Association Database (GAD): FOXI2

    Export disorders for FOXI2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for FOXI2 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with FOXI2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning and analysis of the murine Foxi2 transcription factor. (PubMed id 16289364)1 Wijchers P.J....Smidt M.P. (Biochim. Biophys. Acta 2005)
    2. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)2 Deloukas P.... Rogers J. (Nature 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 399823 HGNC: 32448 AceView: FLJ46831 Ensembl:ENSG00000186766 euGenes: HUgn399823
    ECgene: FOXI2 H-InvDB: FOXI2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for FOXI2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for FOXI2 gene:
    Search GeneIP for patents involving FOXI2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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