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Aliases for FOXG1-AS1 Gene

Subcategory (RNA class) for FOXG1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FOXG1-AS1 Gene

  • FOXG1 Antisense RNA 1 (Head To Head) 2 3 5
  • FOXG1 Antisense RNA 1 2
  • FOXG1-AS 3

External Ids for FOXG1-AS1 Gene

Summaries for FOXG1-AS1 Gene

GeneCards Summary for FOXG1-AS1 Gene

FOXG1-AS1 (FOXG1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FOXG1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXG1-AS1 Gene

Genomics for FOXG1-AS1 Gene

Regulatory Elements for FOXG1-AS1 Gene

Enhancers for FOXG1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H028763 1.8 dbSUPER 0.7 +1.1 1097 0 ZSCAN5A FEZF1 ZNF2 ZFHX2 POLR2A ZNF366 PATZ1 ZSCAN29 ZNF600 PRDM10 FOXG1-AS1 FOXG1
GH14H028764 1.5 Ensembl ENCODE dbSUPER 0.7 -1.4 -1368 4 ZNF133 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 KLF7 ZNF202 SP3 REST LINC02327 BTF3P2 LOC100420424 ENSG00000258028 LINC02326 FOXG1-AS1 LINC01551
GH14H028769 1.4 dbSUPER 0.7 -4.2 -4188 0 FOXA2 LINC01551 FOXG1-AS1
GH14H028761 0.5 dbSUPER 0.7 +3.3 3261 2 POLR2A CEBPA ATF7 EZH2 FOXG1-AS1 FOXG1
GH14H028770 0.7 dbSUPER 0.4 -5.5 -5456 1 PKNOX1 FEZF1 ZNF384 PRDM6 ZNF316 POLR2A ZNF366 ZNF692 ZNF600 EMSY LINC01551 FOXG1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOXG1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FOXG1-AS1 Gene

Chromosome:
14
Start:
28,725,242 bp from pter
End:
28,765,319 bp from pter
Size:
40,078 bases
Orientation:
Minus strand

Genomic View for FOXG1-AS1 Gene

Genes around FOXG1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXG1-AS1 Gene

Proteins for FOXG1-AS1 Gene

Post-translational modifications for FOXG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXG1-AS1 Gene

Domains & Families for FOXG1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXG1-AS1 Gene

Function for FOXG1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXG1-AS1 Gene

Localization for FOXG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXG1-AS1 Gene

Pathways & Interactions for FOXG1-AS1 Gene

SuperPathways for FOXG1-AS1 Gene

No Data Available

Interacting Proteins for FOXG1-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXG1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXG1-AS1 Gene

Drugs & Compounds for FOXG1-AS1 Gene

No Compound Related Data Available

Transcripts for FOXG1-AS1 Gene

mRNA/cDNA for FOXG1-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FOXG1-AS1 Gene

No ASD Table

Relevant External Links for FOXG1-AS1 Gene

GeneLoc Exon Structure for
FOXG1-AS1
ECgene alternative splicing isoforms for
FOXG1-AS1

Expression for FOXG1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXG1-AS1 Gene

genes like me logo Genes that share expression patterns with FOXG1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXG1-AS1 Gene

Orthologs for FOXG1-AS1 Gene

Evolution for FOXG1-AS1 Gene

ENSEMBL:
Gene Tree for FOXG1-AS1 (if available)
TreeFam:
Gene Tree for FOXG1-AS1 (if available)

No data available for Orthologs for FOXG1-AS1 Gene

Paralogs for FOXG1-AS1 Gene

No data available for Paralogs for FOXG1-AS1 Gene

Variants for FOXG1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXG1-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs796052457 Pathogenic 28,767,310(+) AGGTG(A/T)AAATG upstream-variant-2KB, reference, stop-gained
rs1000146007 -- 28,755,591(+) GCGGG(A/G)GAGGA intron-variant
rs1000164280 -- 28,726,945(+) GGAAA(C/T)TATAT intron-variant
rs1000170008 -- 28,738,928(+) AAAAT(C/T)CTTAG intron-variant
rs1000224815 -- 28,761,277(+) CTACA(A/C)CATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FOXG1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3603n54 CNV loss 21841781
nsv475228 CNV novel sequence insertion 20440878
nsv520282 CNV loss 19592680
nsv525536 CNV gain 19592680
nsv526536 CNV gain 19592680
nsv528509 CNV loss 19592680
nsv832757 CNV gain 17160897

Relevant External Links for FOXG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXG1-AS1 Gene

Disorders for FOXG1-AS1 Gene

Relevant External Links for FOXG1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXG1-AS1

No disorders were found for FOXG1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXG1-AS1 Gene

Publications for FOXG1-AS1 Gene

  1. Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders. (PMID: 24007600) Velmeshev D … Faghihi MA (Molecular autism 2013) 2 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for FOXG1-AS1 Gene

Sources for FOXG1-AS1 Gene

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