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Aliases for FOXE3 Gene

Aliases for FOXE3 Gene

  • Forkhead Box E3 2 3 5
  • Forkhead-Related Transcription Factor 8 3 4
  • Forkhead-Related Protein FKHL12 3 4
  • FREAC-8 3 4
  • FKHL12 3 4
  • FREAC8 3 4
  • Forkhead, Drosophila, Homolog-Like 12 3
  • Forkhead Box Protein E3 3
  • CTRCT34 3
  • AAT11 3
  • ASGD2 3

External Ids for FOXE3 Gene

Previous HGNC Symbols for FOXE3 Gene

  • FKHL12

Previous GeneCards Identifiers for FOXE3 Gene

  • GC01P047507
  • GC01P046770
  • GC01P047240
  • GC01P047251
  • GC01P047593
  • GC01P047654
  • GC01P047881
  • GC01P045998

Summaries for FOXE3 Gene

Entrez Gene Summary for FOXE3 Gene

  • This intronless gene belongs to the forkhead family of transcription factors, which is characterized by a distinct forkhead domain. The protein encoded functions as a lens-specific transcription factor and plays an important role in vertebrate lens formation. Mutations in this gene are associated with anterior segment mesenchymal dysgenesis and congenital primary aphakia. [provided by RefSeq, Dec 2009]

GeneCards Summary for FOXE3 Gene

FOXE3 (Forkhead Box E3) is a Protein Coding gene. Diseases associated with FOXE3 include Aphakia, Congenital Primary and Cataract 34, Multiple Types. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and RNA polymerase II transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is FOXE1.

UniProtKB/Swiss-Prot for FOXE3 Gene

  • Transcription factor that controls lens epithelial cell growth through regulation of proliferation, apoptosis and cell cycle (PubMed:22527307, PubMed:25504734). During lens development, controls the ratio of the lens fiber cells to the cells of the anterior lens epithelium by regulating the rate of proliferation and differentiation (By similarity). Controls lens vesicle closure and subsequent separation of the lens vesicle from ectoderm (By similarity). Is required for morphogenesis and differentiation of the anterior segment of the eye (By similarity).

Gene Wiki entry for FOXE3 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXE3 Gene

Genomics for FOXE3 Gene

Regulatory Elements for FOXE3 Gene

Enhancers for FOXE3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G047332 1.7 FANTOM5 ENCODE dbSUPER 16.2 -81.8 -81784 4.2 HDGF FOXA2 CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 ENSG00000226252 FOXE3 CMPK1 TAL1 LINC01389 PDZK1IP1 FOXD2 GC01P047350
GH01G047188 1.5 Ensembl ENCODE dbSUPER 11.4 -224.8 -224838 4.5 HDGF PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF2 ZNF48 TCF12 GATA2 PDZK1IP1 ENSG00000226252 TAL1 FOXE3 LINC01389 FOXD2 FOXD2-AS1 GC01M047220
GH01G047224 1.9 FANTOM5 Ensembl ENCODE dbSUPER 7.1 -187.2 -187181 8.8 HDGF PKNOX1 CREB3L1 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF766 CBX5 TAL1 PDZK1IP1 FOXE3 ENSG00000226252
GH01G047695 1.1 ENCODE dbSUPER 10.6 +282.2 282180 4.6 PKNOX1 THRB ZBTB40 RAD21 RARA YY1 CEBPB NR2F2 ZNF341 GLIS1 FOXD2 FOXD2-AS1 LINC01389 FOXE3 LINC01738 PIR52707 GC01P047709
GH01G047477 1 ENCODE 10.7 +61.9 61890 1.5 PKNOX1 FOXA2 MLX ARID4B ZNF48 YY1 SLC30A9 SP5 ZHX2 MXD4 FOXD2 FOXD2-AS1 LINC01389 FOXE3 CYP4A22-AS1 LINC00853 ENSG00000271355 GC01M047436
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOXE3 on UCSC Golden Path with GeneCards custom track

Genomic Location for FOXE3 Gene

Chromosome:
1
Start:
47,416,072 bp from pter
End:
47,418,052 bp from pter
Size:
1,981 bases
Orientation:
Plus strand

Genomic View for FOXE3 Gene

Genes around FOXE3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXE3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXE3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXE3 Gene

Proteins for FOXE3 Gene

  • Protein details for FOXE3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13461-FOXE3_HUMAN
    Recommended name:
    Forkhead box protein E3
    Protein Accession:
    Q13461
    Secondary Accessions:
    • Q5SVY9
    • Q9NQV9

    Protein attributes for FOXE3 Gene

    Size:
    319 amino acids
    Molecular mass:
    33234 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FOXE3 Gene

Post-translational modifications for FOXE3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FOXE3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FOXE3 Gene

Domains & Families for FOXE3 Gene

Gene Families for FOXE3 Gene

Protein Domains for FOXE3 Gene

Suggested Antigen Peptide Sequences for FOXE3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FOXE3: view

No data available for UniProtKB/Swiss-Prot for FOXE3 Gene

Function for FOXE3 Gene

Molecular function for FOXE3 Gene

GENATLAS Biochemistry:
transcription factor-like 12,with a Drosophila homeo forkhead DNA binding domain homolog
UniProtKB/Swiss-Prot Function:
Transcription factor that controls lens epithelial cell growth through regulation of proliferation, apoptosis and cell cycle (PubMed:22527307, PubMed:25504734). During lens development, controls the ratio of the lens fiber cells to the cells of the anterior lens epithelium by regulating the rate of proliferation and differentiation (By similarity). Controls lens vesicle closure and subsequent separation of the lens vesicle from ectoderm (By similarity). Is required for morphogenesis and differentiation of the anterior segment of the eye (By similarity).

Gene Ontology (GO) - Molecular Function for FOXE3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA --
GO:0003677 DNA binding IDA 25504734
GO:0003700 transcription factor activity, sequence-specific DNA binding TAS 8825632
GO:0043565 sequence-specific DNA binding ISS 11980846
genes like me logo Genes that share ontologies with FOXE3: view
genes like me logo Genes that share phenotypes with FOXE3: view

Human Phenotype Ontology for FOXE3 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXE3 Gene

Localization for FOXE3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FOXE3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FOXE3 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for FOXE3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 25504734
GO:0005667 transcription factor complex IDA 10652278
genes like me logo Genes that share ontologies with FOXE3: view

Pathways & Interactions for FOXE3 Gene

SuperPathways for FOXE3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FOXE3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001654 eye development IEA,IMP 27218149
GO:0002088 lens development in camera-type eye ISS 17064680
GO:0002930 trabecular meshwork development ISS 17064680
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with FOXE3: view

No data available for Pathways by source and SIGNOR curated interactions for FOXE3 Gene

Transcripts for FOXE3 Gene

mRNA/cDNA for FOXE3 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXE3 Gene

Forkhead box E3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FOXE3 Gene

No ASD Table

Relevant External Links for FOXE3 Gene

GeneLoc Exon Structure for
FOXE3
ECgene alternative splicing isoforms for
FOXE3

Expression for FOXE3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXE3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FOXE3 Gene

This gene is overexpressed in Testis (x8.7), Brain - Putamen (basal ganglia) (x6.5), Nerve - Tibial (x5.1), and Brain - Cerebellar Hemisphere (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of FOXE3 Gene:

FOXE3

SOURCE GeneReport for Unigene cluster for FOXE3 Gene:

Hs.112968

Evidence on tissue expression from TISSUES for FOXE3 Gene

  • Eye(4.4)

Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXE3 Gene

Germ Layers:
  • ectoderm
Systems:
  • nervous
Organs:
Head and neck:
  • brain
  • cranial nerve
  • eye
  • head
General:
  • peripheral nervous system
genes like me logo Genes that share expression patterns with FOXE3: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FOXE3 Gene

Orthologs for FOXE3 Gene

This gene was present in the common ancestor of animals.

Orthologs for FOXE3 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Foxe3 35
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FOXE3 35
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FOXE3 35
  • 52 (a)
OneToOne
chicken
(Gallus gallus)
Aves FOXE3 35
  • 40 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FOXE3 35
  • 58 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii foxe3 35
  • 33 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta fd59A 36
  • 73 (a)
worm
(Caenorhabditis elegans)
Secernentea unc-130 36
  • 64 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 17 (a)
OneToOne
Species where no ortholog for FOXE3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for FOXE3 Gene

ENSEMBL:
Gene Tree for FOXE3 (if available)
TreeFam:
Gene Tree for FOXE3 (if available)

Paralogs for FOXE3 Gene

(12) SIMAP similar genes for FOXE3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FOXE3: view

Variants for FOXE3 Gene

Sequence variations from dbSNP and Humsavar for FOXE3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs371048362 Anterior segment dysgenesis 2 (ASGD2) [MIM:610256] 47,416,584(+) GGGCC(G/T)CCGCC intron-variant, reference, missense
rs746531116 Anterior segment dysgenesis 2 (ASGD2) [MIM:610256] 47,416,559(+) TCGCC(A/G)TGGCT intron-variant, reference, missense
VAR_072783 Anterior segment dysgenesis 2 (ASGD2) [MIM:610256]
VAR_078112 Cataract 34, multiple types (CTRCT34) [MIM:612968]
VAR_078113 Cataract 34, multiple types (CTRCT34) [MIM:612968]

Structural Variations from Database of Genomic Variants (DGV) for FOXE3 Gene

Variant ID Type Subtype PubMed ID
dgv259n54 CNV loss 21841781
dgv260n54 CNV loss 21841781
dgv261n54 CNV loss 21841781
dgv262n54 CNV gain 21841781
dgv263n54 CNV gain+loss 21841781
dgv264n54 CNV loss 21841781
nsv546168 CNV loss 21841781
nsv546169 CNV gain 21841781
nsv546188 CNV loss 21841781
nsv546189 CNV gain+loss 21841781

Variation tolerance for FOXE3 Gene

Gene Damage Index Score: 2.10; 38.33% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FOXE3 Gene

Human Gene Mutation Database (HGMD)
FOXE3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXE3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FOXE3 Gene

Disorders for FOXE3 Gene

MalaCards: The human disease database

(13) MalaCards diseases for FOXE3 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
aphakia, congenital primary
  • congenital aphakia
cataract 34, multiple types
  • cataract 34 multiple types
anterior segment mesenchymal dysgenesis
  • anterior segment ocular dysgenesis
aortic aneurysm, familial thoracic 11
  • aat11
peters anomaly
  • peters-plus syndrome
- elite association - COSMIC cancer census association via MalaCards
Search FOXE3 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

FOXE3_HUMAN
  • Anterior segment dysgenesis 2 (ASGD2) [MIM:610256]: A form of anterior segment dysgenesis, a group of defects affecting anterior structures of the eye including cornea, iris, lens, trabecular meshwork, and Schlemm canal. Anterior segment dysgeneses result from abnormal migration or differentiation of the neural crest derived mesenchymal cells that give rise to components of the anterior chamber during eye development. Different anterior segment anomalies may exist alone or in combination, including iris hypoplasia, enlarged or reduced corneal diameter, corneal vascularization and opacity, posterior embryotoxon, corectopia, polycoria, abnormal iridocorneal angle, ectopia lentis, and anterior synechiae between the iris and posterior corneal surface. Clinical conditions falling within the phenotypic spectrum of anterior segment dysgeneses include aniridia, Axenfeld anomaly, Reiger anomaly/syndrome, Peters anomaly, and iridogoniodysgenesis. Some ASGD2 patients show congenital primary aphakia, a defect caused by eye development arrest around the 4th-5th week of gestation. This prevents the formation of any lens structure and leads to severe secondary ocular anomalies, including a complete aplasia of the anterior segment of the eye. In contrast, in secondary aphakic eyes, lens induction has occurred, and the lens vesicle has developed to some degree but finally has progressively resorbed perinatally, leading, therefore, to less severe ocular defects. ASGD2 inheritance is autosomal recessive. {ECO:0000269 PubMed:11159941, ECO:0000269 PubMed:11980846, ECO:0000269 PubMed:16826526, ECO:0000269 PubMed:19708017, ECO:0000269 PubMed:25504734}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for FOXE3

Genetic Association Database (GAD)
FOXE3
Human Genome Epidemiology (HuGE) Navigator
FOXE3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXE3
genes like me logo Genes that share disorders with FOXE3: view

No data available for Genatlas for FOXE3 Gene

Publications for FOXE3 Gene

  1. Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12). (PMID: 8825632) Larsson C. … Carlsson P. (Genomics 1995) 2 3 4 64
  2. Functional Analysis of FOXE3 Mutations Causing Dominant and Recessive Ocular Anterior Segment Disease. (PMID: 25504734) Islam L. … Sowden J.C. (Hum. Mutat. 2015) 3 4 64
  3. Growth inhibition of human lens epithelial cells by short hairpin RNA in transcription factor forkhead box E3 (FOXE3). (PMID: 22527307) Wang Y. … Huang Y. (Graefes Arch. Clin. Exp. Ophthalmol. 2012) 3 4 64
  4. FOXE3 plays a significant role in autosomal recessive microphthalmia. (PMID: 20140963) Reis L.M. … Semina E.V. (Am. J. Med. Genet. A 2010) 3 46 64
  5. Seeing clearly: the dominant and recessive nature of FOXE3 in eye developmental anomalies. (PMID: 19708017) Iseri S.U. … Ragge N.K. (Hum. Mutat. 2009) 3 4 64

Products for FOXE3 Gene

Sources for FOXE3 Gene

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