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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FOXD4L2 Gene

protein-coding   GIFtS: 32
GCID: GC09P042717          (predicted)

Forkhead Box D4-Like 2

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Forkhead Box D4-Like 21 2
FOXD4-Like 23

External Ids:    HGNC: 248131   Entrez Gene: 1000365192   Ensembl: ENSG000002048287   OMIM: 6110855   UniProtKB: Q6VB853   

Export aliases for FOXD4L2 gene to outside databases

Previous GC identifers: GC09P066374 GC09U900605 GC09P068147 GC09M069667 GC09P042708


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for FOXD4L2 Gene: 
FOXD4L2 (forkhead box D4-like 2) is a protein-coding gene. Diseases associated with FOXD4L2 include acne, and leukemia. An important paralog of this gene is FOXF1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000009.11  NT_078055.4  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FOXD4L2 gene promoter:
         TBP   Tal-1   p53   FOXD1   C/EBPalpha   E47   GATA-1   GATA-2   CHOP-10   STAT3   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for FOXD4L2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FOXD4L2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9p12   Ensembl cytogenetic band:  9p12   HGNC cytogenetic band: 9p12

FOXD4L2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FOXD4L2 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P042717:  view genomic region     (about GC identifiers)

Start:
42,717,234 bp from pter      End:
42,720,342 bp from pter
Size:
3,109 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: FX4L2_HUMAN, Q6VB85 (See protein sequence)
Recommended Name: Forkhead box protein D4-like 2  
Size: 416 amino acids; 45892 Da
Subcellular location: Nucleus (By similarity)
Miscellaneous: 5 FOXD4-like proteins (FOXD4L2, FOXD4L3, FOXD4L4, FOXD4L5 and FOXD4L6) are encoded by a strongly
repeated region of the 9q12 chromosome region. They are very similar and it is therefore difficult to provide a
clear and unambiguous protein sequence. Our sequences are in agreement with HGNC nomenclature

Explore the universe of human proteins at neXtProt for FOXD4L2: NX_Q6VB85

Explore proteomics data for FOXD4L2 at MOPED 

FOXD4L2 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

FOXD4L2 Protein Expression

REFSEQ proteins: NP_001092749.1  
ENSEMBL proteins: 
 ENSP00000366814  

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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus ----
GO:0005667transcription factor complex ----

FOXD4L2 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
3 InterPro protein domains:
 IPR011991 WHTH_DNA-bd_dom
 IPR018122 TF_fork_head_CS
 IPR001766 TF_fork_head

Graphical View of Domain Structure for InterPro Entry Q6VB85

ProtoNet protein and cluster: Q6VB85

UniProtKB/Swiss-Prot: FX4L2_HUMAN, Q6VB85
Similarity: Contains 1 fork-head DNA-binding domain


FOXD4L2 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

     Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003690double-stranded DNA binding ----
GO:0003700sequence-specific DNA binding transcription factor activity ----
GO:0003705RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity ----
GO:0008134transcription factor binding ----
GO:0008301DNA binding, bending ----
     
FOXD4L2 for ontologies           About GeneDecksing


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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FOXD4L2

Gene Ontology (GO): 5/17 biological process terms (GO ID links to tree view) (see all 17):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001755neural crest cell migration ----
GO:0006355regulation of transcription, DNA-dependent ----
GO:0007389pattern specification process ----
GO:0007422peripheral nervous system development ----
GO:0009790embryo development ----

FOXD4L2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
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Search CenterWatch for drugs/clinical trials and news about FOXD4L2 / FX4L2

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for FOXD4L2 gene: 
NM_001099279.1  

Unigene Cluster for FOXD4L2:

Forkhead box D4-like 2
Hs.712520
Unigene Representative Sequence: NM_001099279
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000377590(uc004acn.3)
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

FOXD4L2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AACAGGATCA
FOXD4L2 Expression
About this image


See FOXD4L2 Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.712520
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for FOXD4L2 gene from 3/7 species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
zebrafish
(Danio rerio)
Actinopterygii foxd56
forkhead box D5
34(a)
1 → many
8(31300987-31302137)
fruit fly
(Drosophila melanogaster)
Insecta fd59A6
forkhead domain 59A
22(a)
1 → many
2R(18754044-18758229)
worm
(Caenorhabditis elegans)
Secernentea unc-1306
Protein UNC-130
29(a)
1 → many
II(11281986-11283954)
        Species with no ortholog for FOXD4L2

ENSEMBL Gene Tree for FOXD4L2 (if available)
TreeFam Gene Tree for FOXD4L2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for FOXD4L2 gene
FOXD4L41 2  FOXD4L51 2  FOXF12  FOXA22  FOXF22  FOXD4L12  FOXC22  FOXI22  
FOXB12  FOXE32  FOXC12  FOXD4L32  FOXA32  FOXD12  FOXD32  FOXL12  
FOXA12  FOXE12  FOXB22  FOXI12  FOXD4L62  FOXS12  FOXD22  FOXL22  
FOXD42  
12 SIMAP similar genes for FOXD4L2 using alignment to 1 protein entry:     FX4L2_HUMAN:
FOXD4L4    FOXD4L5    FOXD4L3    FOXD4L6    FOXD4L1    FOXD4
FOXE1    FOXD3    FOXL1    FOXD2    FOXE3    FOXD1

FOXD4L2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

3 SNPs in FOXD4L2 are shown    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 9 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1999147571,2
--42716565(+) CCCAG-/ATAA  
        
ATAAA
1 -- us2k10--------
rs2009821781,2
----42720012(+) GCTAAA/GTAATA 1 -- ut310--------
rs3688834341,2
----42716571(+) TAAAT-/AAACCA 1 -- us2k10--------

HapMap Linkage Disequilibrium report for FOXD4L2 (42717234 - 42720342 bp)

Structural Variations
     Database of Genomic Variants (DGV) 10/12 variations for FOXD4L2 (see all 12):    About this table     
Variant IDTypeSubtypePubMed ID
dgv135n16CNV Deletion17901297
esv2738445CNV Deletion23290073
nsv471467CNV Duplication19718026
esv33449CNV Loss17666407
esv23416CNV Gain19812545
dgv8190n71CNV Gain+Loss21882294
nsv8518CNV Gain+Loss18304495
essv2899CNV CNV17122850
nsv469665CNV Complex16826518
dgv2383e1CNV Complex17122850

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
OMIM gene information: 611085    OMIM disorders: --

2 diseases for FOXD4L2:    About MalaCards
acne    leukemia


FOXD4L2 for disorders           About GeneDecksing


Export disorders for FOXD4L2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for FOXD4L2 gene integrated from 9 sources:
(articles sorted by number of sources associating them with FOXD4L2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions. (PubMed id 12421752)1, 2, 3 Fan Y.... Trask B.J. (2002)
  2. Diverse fates of paralogs following segmental duplication of telomeric genes. (PubMed id 15233989)1, 2 Wong A....Ledbetter D.H. (2004)
  3. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)2 Humphray S.J.... Dunham I. (2004)
  4. FOXD4a and FOXD4b, two new winged helix transcription factors, are expressed in human leukemia cell lines. (PubMed id 12234674)1 Freyaldenhoven B.S.... Wielckens K. (2002)
  5. Toward a complete human genome sequence. (PubMed id 9847074)1 Wilson R. (1998)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 100036519 HGNC: 24813 Ensembl:ENSG00000204828 euGenes: HUgn100036519 ECgene: FOXD4L2
H-InvDB: FOXD4L2

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for FOXD4L2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for FOXD4L2 gene:
Search GeneIP for patents involving FOXD4L2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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About This Section

 
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 Browse SwitchGear 3'UTR luciferase reporter plasmids for FOXD4L2
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 Search ThermoFisher Antibodies for FOXD4L2
 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FOXD4L2
 inGenious Targeting Laboratory - Custom generated mouse model solutions for FOXD4L2
 inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for FOXD4L2
Customized:
 lentivirus for stable overexpression of FOXD4L2
 lentivirus expression plasmids for stable overexpression of FOXD4L2
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Customized transgenic rodents for:
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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transforming growth factor, beta 1
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