FOXD4 Gene
protein-coding GIFtS: 45
GCID: GC09M000116
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forkhead box D4
(Previous symbol: FKHL9)
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Aliases
for FOXD4 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Forkhead Box D41 2 | | FOXD4A2 3 | | FKHL91 2 3 5 | | FREAC-52 3 | | FREAC51 2 3 | | FOXD4a1 | | Forkhead-Related Protein FKHL92 3 | | Forkhead Box Protein D42 | | Forkhead-Related Transcription Factor 52 3 | | Forkhead, Drosophila, Homolog-Like 92 | | Myeloid Factor-Alpha2 3 | | Forkhead-Related Activator 52 |
Export aliases for FOXD4 gene to outside databasesPrevious GC identifers: GC09M000084 GC09M000106 GC09M000058 |
Summaries
for FOXD4 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for FOXD4:
This gene encodes a member of the forkhead/winged helix-box (FOX) family of transcription factors. FOX transcriptionfactors play critical roles in the regulation of multiple processes including metabolism, cell proliferation and geneexpression during ontogenesis. Mutations in this gene are associated with a complex phenotype consisting of dilatedcardiomyopathy, obsessive-compulsive disorders, and suicidality. (provided by RefSeq, Mar 2012)
Gene Wiki entry for FOXD4
|
Genomic Views
for FOXD4 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000009.11 NC_018920.1 NT_008413.18
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the FOXD4 gene promoter:
TBP C/EBPbeta LCR-F1 GATA-1 GATA-2 Pax-3 FOXO4 STAT3
Other transcription factors
Search SABiosciences Chromatin IP Primers for FOXD4
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FOXD4 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9p24.3 Ensembl cytogenetic band: 9p24.3 HGNC cytogenetic band: 9p24.3FOXD4 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M000116: view genomic region
(about GC identifiers)
Start:
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116,234 bp from pter |
End:
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118,417 bp from pter |
Size:
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2,184 bases |
Orientation:
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minus strand |
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Proteins
for FOXD4 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: FOXD4_HUMAN, Q12950 (See
protein sequence)Recommended Name: Forkhead box protein D4 Size: 439 amino acids; 47309 Da
Subcellular location: Nucleus
Secondary accessions: B2RN05 B9EGL7 Q5VVK1 Q8WXT6Explore the universe of human proteins at neXtProt for FOXD4: NX_Q12950
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q12950
FOXD4 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_997188.2
ENSEMBL proteins: ENSP00000371940
Human Recombinant Protein Products:
Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table
FOXD4 for ontologies About GeneDecksing
FOXD4 Antibody Products:
Assay Products for FOXD4: |
Protein
Domains /
Families
for FOXD4 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
FOXD4 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q12950ProtoNet protein and cluster: Q12950 UniProtKB/Swiss-Prot: FOXD4_HUMAN, Q12950Similarity: Contains 1 fork-head DNA-binding domain |
Function
for FOXD4 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
Genatlas biochemistry entry for FOXD4:transcription factor-like 9,with a Drosophila homeo forkhead DNA binding domain homolog
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FOXD4 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FOXD4
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FOXD4 |
Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003690 | double-stranded DNA binding |
IBA | -- | | GO:0003700 | sequence-specific DNA binding transcription factor activity |
TAS | 9325056 | | GO:0003705 | RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity |
IBA | -- | | GO:0008134 | transcription factor binding |
IBA | -- | | GO:0008301 | DNA binding, bending |
ISS | 7957066 |
FOXD4 for ontologies About GeneDecksing
|
Pathways & Interactions
for FOXD4 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FOXD4
Gene Ontology (GO): 5/18 biological process terms (GO ID links to tree view) (see all 18): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001755 | neural crest cell migration |
IBA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
NAS | -- | | GO:0007275 | multicellular organismal development |
NAS | -- | | GO:0007389 | pattern specification process |
IBA | -- | | GO:0007422 | peripheral nervous system development |
IBA | -- |
FOXD4 for ontologies About GeneDecksing
|
Drugs & Compounds
for FOXD4 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FOXD4
Search CenterWatch for drugs/clinical trials and news about FOXD4
|
Transcripts
for FOXD4 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FOXD4 gene: NM_207305.4 Unigene Cluster for FOXD4: Forkhead box D4 Hs.584759 [show with all ESTs]Unigene Representative Sequence: BC0894321 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000382500(uc003zfz.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FOXD4 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FOXD4
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: FOXD4 (NM_207305) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FOXD4 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FOXD4 |
Additional cDNA sequence: AF452724.1 AY344640.1 BC089432.1 BC103886.2 BC136570.1 BC136571.1 U13223.1 1 DOTS entry: DT.436073 14 AceView cDNA sequences: U13223 AF452724 BV206348 CA313252 CF132229 AW451208 AI819034 AY344640 NM_207305 CF139066 CB856755 AI860024 AA628485 AW151124
GeneLoc Exon Structure
|
Expression
for FOXD4 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FOXD4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTCCCCCTTC
About this image
See FOXD4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for FOXD4
SOURCE GeneReport for Unigene cluster: Hs.584759
SABiosciences Custom PCR Arrays for FOXD4
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FOXD4
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FOXD4 |
Orthologs
for FOXD4 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for FOXD4 gene from 4/14 species (see all 14) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
lizard
(Anolis carolinensis) |
Reptilia |
-- |
-- |
55(a) |
1 → many |
2(49994144-49994639) |
zebrafish
(Danio rerio) |
Actinopterygii |
foxd56 |
forkhead box D5 |
31(a) |
1 → many |
8(31300987-31302137) |
fruit fly
(Drosophila melanogaster) |
Insecta |
fd59A6 |
forkhead domain 59A |
19(a) |
1 → many |
2R(18754044-18758229) |
worm
(Caenorhabditis elegans) |
Secernentea |
unc-1301 |
Protein UNC-130 |
49.78(n)
50.22(a) |
|
174721 NM_064010.2 NP_496411.1 |
ENSEMBL Gene Tree for FOXD4 (if available)
TreeFam Gene Tree for FOXD4 (if available) |
Paralogs
for FOXD4 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for FOXD4 gene
- FOXF12 FOXA22 FOXD4L12 FOXF22 FOXC22 FOXB12 FOXI22 FOXE32
- FOXC12 FOXD4L22 FOXQ12 FOXD4L32 FOXA32 FOXD12 FOXD32 FOXD4L52
- FOXD4L42 FOXE12 FOXL12 FOXA12 FOXB22 FOXI12 FOXD4L62 FOXS12
- FOXL22 FOXD22
13 SIMAP similar genes for FOXD4 using alignment to 3 protein entries: FOXD4_HUMAN (see all proteins):FOXD4L2 FOXD4L4 FOXD4L5 FOXD4L1 FOXD4L3 FOXD4L6
FOXE1 FOXC1 FOXD3 FOXE3 FOXL2 FOXB1
FOXD2
FOXD4 for paralogs About GeneDecksing
|
Genomic Variants
for FOXD4 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 9 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for FOXD4 (116234 - 118417 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 10 variations for FOXD4
10 CNVs: 8617 31461 2780 3753 52810 95777 34455 8616 52811 65299
Human Gene Mutation Database (HGMD): FOXD4
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FOXD4 |
|
Disorders
/ Diseases
for FOXD4 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
FOXD4 for disorders About GeneDecksing
OMIM gene information: 601092
OMIM disorders: --
5  diseases for FOXD4: About MalaCardsobsessive-compulsive disorder dilated cardiomyopathy cardiomyopathy leukemia
neuronitis
Export disorders for FOXD4 gene to outside databases
|
Publications
for FOXD4 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FOXD4 gene, integrated from 9 sources (see all 17):
(articles sorted by number of sources associating them with FOXD4) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- FOXD4a and FOXD4b, two new winged helix transcription factors, are expressed in human leukemia cell lines. (PubMed id 12234674)1, 2, 3 Freyaldenhoven B.S.... Wielckens K. (2002)
- Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending. (PubMed id 7957066)1, 2, 3 Pierrou S....Carlsson P. (1994)
- DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, 2 Humphray S.J.... Dunham I. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions. (PubMed id 12421752)1, 2 Fan Y.... Trask B.J. (2002)
- Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12). (PubMed id 8825632)1, 3 Larsson C....Carlsson P. (1995)
- Pure distal 9p deletion in a female infant with cerebr al palsy. (PubMed id 22876580)1 Chen C.P....Wang W. (2012)
- Inv dup del(9p): prenatal diagnosis and molecular cyto genetic characterization by fluorescence in situ hybridization and array compara tive genomic hybridization. (PubMed id 21482378)1 Chen C.P....Wang W. (2011)
- Maternally inherited partial monosomy 9p (pter -> p24. 1) and partial trisomy 20p (pter -> p12.1) characterized by microarray comparati ve genomic hybridization. (PubMed id 21948691)1 Freitas E.L....Gil-da-Silva-Lopes V.L. (2011)
- Update of human and mouse forkhead box (FOX) gene fami lies. (PubMed id 20650821)1 Jackson B.C....Vasiliou V. (2010)
|
External Searches for FOXD4 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing FOXD4 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FOXD4 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FOXD4 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FOXD4 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for FOXD4 gene:
Search GeneIP for patents involving FOXD4
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FOXD4 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for FOXD4 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FOXD4 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FOXD4 | | | OriGene Protein Over-expression Lysate for FOXD4 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for FOXD4 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FOXD4 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FOXD4 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FOXD4 |
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