Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FOXD2-AS1 Gene

Subcategory (RNA class) for FOXD2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FOXD2-AS1 Gene

  • FOXD2 Antisense RNA 1 (Head To Head) 2 3 5
  • FOXD2 Antisense RNA 1 (Non-Protein Coding) 2
  • FOXD2 Antisense RNA 1 2

External Ids for FOXD2-AS1 Gene

ORGUL Members for FOXD2-AS1 Gene

Previous GeneCards Identifiers for FOXD2-AS1 Gene

  • GC01M047899

Summaries for FOXD2-AS1 Gene

GeneCards Summary for FOXD2-AS1 Gene

FOXD2-AS1 (FOXD2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FOXD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXD2-AS1 Gene

Genomics for FOXD2-AS1 Gene

Regulatory Elements for FOXD2-AS1 Gene

Enhancers for FOXD2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H047188 1.5 Ensembl ENCODE dbSUPER 10 +243.4 243407 4 HDGF PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF2 TCF12 ZNF143 ATF7 PDZK1IP1 ENSG00000226252 TAL1 FOXE3 LINC01389 FOXD2 FOXD2-AS1 GC01M047220
GH01H047758 1.4 FANTOM5 ENCODE dbSUPER 9.5 -324.6 -324557 1 TBP JUN MAX RAD21 BRCA1 RFX5 ZFHX2 POLR2A NFYB SMC3 FOXD2 FOXD2-AS1 ENSG00000225028 ENSG00000223814 GC01M047709
GH01H047695 1.1 ENCODE dbSUPER 11.4 -263.6 -263611 4 FOXA2 THRB ZBTB40 RAD21 RARA YY1 CEBPB ZNF341 GLIS1 CEBPA FOXD2 FOXD2-AS1 LINC01389 FOXE3 LINC01738 PIR52707 GC01P047709
GH01H047477 1 ENCODE 11.4 -43.3 -43321 1 PKNOX1 FOXA2 MLX ARID4B YY1 SLC30A9 SP5 MXD4 MIER2 PPARG FOXD2 FOXD2-AS1 LINC01389 FOXE3 CYP4A22-AS1 LINC00853 ENSG00000271355 GC01M047436
GH01H047253 0.8 ENCODE 9.6 +180.4 180413 1 SOX13 SAP130 ZNF384 CEBPG TEAD3 NR2F6 ATF7 CREM SOX5 GATAD2A TAL1 ENSG00000226252 CMPK1 LINC00853 CYP4A22-AS1 FOXD2 FOXD2-AS1 GC01M047285
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOXD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FOXD2-AS1 Gene

Chromosome:
1
Start:
47,432,133 bp from pter
End:
47,434,641 bp from pter
Size:
2,509 bases
Orientation:
Minus strand

Genomic View for FOXD2-AS1 Gene

Genes around FOXD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXD2-AS1 Gene

Proteins for FOXD2-AS1 Gene

Post-translational modifications for FOXD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXD2-AS1 Gene

Domains & Families for FOXD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXD2-AS1 Gene

Function for FOXD2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXD2-AS1 Gene

Localization for FOXD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FOXD2-AS1 Gene

Pathways & Interactions for FOXD2-AS1 Gene

SuperPathways for FOXD2-AS1 Gene

No Data Available

Interacting Proteins for FOXD2-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXD2-AS1 Gene

Drugs & Compounds for FOXD2-AS1 Gene

No Compound Related Data Available

Transcripts for FOXD2-AS1 Gene

mRNA/cDNA for FOXD2-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXD2-AS1 Gene

FOXD2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXD2-AS1 Gene

No ASD Table

Relevant External Links for FOXD2-AS1 Gene

GeneLoc Exon Structure for
FOXD2-AS1
ECgene alternative splicing isoforms for
FOXD2-AS1

Expression for FOXD2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOXD2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXD2-AS1 Gene

This gene is overexpressed in Colon - Transverse (x5.6), Artery - Aorta (x4.9), Nerve - Tibial (x4.6), and Artery - Tibial (x4.3).

SOURCE GeneReport for Unigene cluster for FOXD2-AS1 Gene:

Hs.127762
genes like me logo Genes that share expression patterns with FOXD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOXD2-AS1 Gene

Orthologs for FOXD2-AS1 Gene

Evolution for FOXD2-AS1 Gene

ENSEMBL:
Gene Tree for FOXD2-AS1 (if available)
TreeFam:
Gene Tree for FOXD2-AS1 (if available)

No data available for Orthologs for FOXD2-AS1 Gene

Paralogs for FOXD2-AS1 Gene

No data available for Paralogs for FOXD2-AS1 Gene

Variants for FOXD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXD2-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000176777 -- 47,434,464(+) GAGGC(A/C)CGGCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000566625 -- 47,433,162(+) GTGGA(C/T)ACCAA intron-variant, nc-transcript-variant
rs1000636850 -- 47,432,794(+) TATGG(G/T)ACACA intron-variant, nc-transcript-variant
rs1000744561 -- 47,433,572(+) CTTGG(A/G)TGCTT intron-variant, nc-transcript-variant
rs1000783235 -- 47,432,130(+) CAGTC(C/T)AATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FOXD2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1001779 CNV gain 25217958
nsv950710 CNV deletion 24416366

Relevant External Links for FOXD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXD2-AS1 Gene

Disorders for FOXD2-AS1 Gene

Relevant External Links for FOXD2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXD2-AS1

No disorders were found for FOXD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXD2-AS1 Gene

Publications for FOXD2-AS1 Gene

  1. Highly expressed long non-coding RNA FOXD2-AS1 promotes non-small cell lung cancer progression via Wnt/β-catenin signaling. (PMID: 28132805) Rong L … Lu J (Biochemical and biophysical research communications 2017) 2 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  3. Long non-coding RNA FOXD2-AS1 functions as a tumor promoter in colorectal cancer by regulating EMT and Notch signaling pathway. (PMID: 28925486) Yang X … Zhou X (European review for medical and pharmacological sciences 2017) 3

Products for FOXD2-AS1 Gene

Sources for FOXD2-AS1 Gene

Content
Loading form....