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Aliases for FOXD2-AS1 Gene

Subcategory (RNA class) for FOXD2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FOXD2-AS1 Gene

  • FOXD2 Antisense RNA 1 (Head To Head) 2 3
  • FOXD2 Antisense RNA 1 (Non-Protein Coding) 2
  • FOXD2 Antisense RNA 1 2

External Ids for FOXD2-AS1 Gene

ORGUL Members for FOXD2-AS1 Gene

Previous GeneCards Identifiers for FOXD2-AS1 Gene

  • GC01M047899

Summaries for FOXD2-AS1 Gene

GeneCards Summary for FOXD2-AS1 Gene

FOXD2-AS1 (FOXD2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXD2-AS1 Gene

Genomics for FOXD2-AS1 Gene

Genomic Location for FOXD2-AS1 Gene

Start:
47,432,133 bp from pter
End:
47,434,641 bp from pter
Size:
2,509 bases
Orientation:
Minus strand

Genomic View for FOXD2-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FOXD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXD2-AS1 Gene

No data available for Regulatory Elements for FOXD2-AS1 Gene

Proteins for FOXD2-AS1 Gene

Post-translational modifications for FOXD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXD2-AS1 Gene

Domains for FOXD2-AS1 Gene

Gene Families for FOXD2-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FOXD2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXD2-AS1 Gene

Function for FOXD2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FOXD2-AS1 Gene

Localization for FOXD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FOXD2-AS1 Gene

Pathways for FOXD2-AS1 Gene

SuperPathways for FOXD2-AS1 Gene

No Data Available

Interacting Proteins for FOXD2-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXD2-AS1 Gene

None

No data available for Pathways by source for FOXD2-AS1 Gene

Transcripts for FOXD2-AS1 Gene

mRNA/cDNA for FOXD2-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXD2-AS1 Gene

FOXD2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXD2-AS1 Gene

No ASD Table

Relevant External Links for FOXD2-AS1 Gene

GeneLoc Exon Structure for
FOXD2-AS1
ECgene alternative splicing isoforms for
FOXD2-AS1

Expression for FOXD2-AS1 Gene

mRNA expression in normal human tissues for FOXD2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXD2-AS1 Gene

This gene is overexpressed in Colon - Transverse (5.6), Artery - Aorta (4.9), Nerve - Tibial (4.6), and Artery - Tibial (4.3).

SOURCE GeneReport for Unigene cluster for FOXD2-AS1 Gene Hs.127762

genes like me logo Genes that share expressions with FOXD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FOXD2-AS1 Gene

Orthologs for FOXD2-AS1 Gene

Evolution for FOXD2-AS1 Gene

ENSEMBL:
Gene Tree for FOXD2-AS1 (if available)
TreeFam:
Gene Tree for FOXD2-AS1 (if available)

No data available for Orthologs for FOXD2-AS1 Gene

Paralogs for FOXD2-AS1 Gene

No data available for Paralogs for FOXD2-AS1 Gene

Variants for FOXD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXD2-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs3738317 -- 47,432,789(+) ATGTC(A/T)ATGGT nc-transcript-variant
rs3814004 -- 47,433,315(+) GCCGA(A/G)AAACC nc-transcript-variant
rs4385767 -- 47,433,373(+) AGCGT(C/G)CCCCA nc-transcript-variant
rs10890480 -- 47,433,891(+) AGCCG(A/C)AGATC nc-transcript-variant
rs11808253 -- 47,432,703(+) TTCCG(A/C)CCCCA nc-transcript-variant

Relevant External Links for FOXD2-AS1 Gene

HapMap Linkage Disequilibrium report
FOXD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FOXD2-AS1 Gene

Disorders for FOXD2-AS1 Gene

No disorders were found for FOXD2-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for FOXD2-AS1 Gene

Publications for FOXD2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FOXD2-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FOXD2-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FOXD2-AS1
    • Block miRNA regulation of FOXD2-AS1 using miScript Target Protectors

    Sources for FOXD2-AS1 Gene

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