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Aliases for FOXD2-AS1 Gene

Subcategory (RNA class) for FOXD2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FOXD2-AS1 Gene

  • FOXD2 Antisense RNA 1 (Head To Head) 2 3 5
  • FOXD2 Antisense RNA 1 (Non-Protein Coding) 2
  • FOXD2 Antisense RNA 1 2

External Ids for FOXD2-AS1 Gene

ORGUL Members for FOXD2-AS1 Gene

Previous GeneCards Identifiers for FOXD2-AS1 Gene

  • GC01M047899

Summaries for FOXD2-AS1 Gene

GeneCards Summary for FOXD2-AS1 Gene

FOXD2-AS1 (FOXD2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXD2-AS1 Gene

Genomics for FOXD2-AS1 Gene

Regulatory Elements for FOXD2-AS1 Gene

Enhancers for FOXD2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F047477 0.5 ENCODE 11.4 -43.3 -43321 1.5 PKNOX1 MLX ARID4B ZNF48 SLC30A9 SP5 MXD4 MIER2 PPARG MIER3 FOXD2 FOXD2-AS1 LINC01389 FOXE3 CYP4A22-AS1 LINC00853 ENSG00000271355 GC01M047436
GH01F047695 0.5 ENCODE 11.4 -263.6 -263611 4.6 SOX13 PKNOX1 THRB ZBTB40 ZIC2 RARA YY1 ZNF664 ZNF316 PRDM10 FOXD2 FOXD2-AS1 LINC01389 FOXE3 ENSG00000227947 PIR52707 GC01P047709
GH01F047532 1 Ensembl ENCODE 11 -99.2 -99193 1.9 PKNOX1 ZNF316 POLR2A NFE2 ZSCAN29 MAFK TCF7L2 NFE2L2 EZH2 ZNF263 FOXD2 FOXD2-AS1 LINC01389 GC01P047528 ATP6V0E1P4
GH01F047507 0.4 Ensembl 10.8 -73.7 -73659 0.7 PKNOX1 KLF17 FEZF1 ZNF121 GLIS2 ZNF366 EGR2 SP3 ZNF488 ZNF623 FOXD2 FOXD2-AS1 RPL21P24 GC01P047528
GH01F047752 0.2 Ensembl 10.8 -317.6 -317560 0.4 NFIA FOXD2 FOXD2-AS1 ENSG00000223814 GC01M047709
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FOXD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FOXD2-AS1 Gene

Chromosome:
1
Start:
47,432,133 bp from pter
End:
47,434,641 bp from pter
Size:
2,509 bases
Orientation:
Minus strand

Genomic View for FOXD2-AS1 Gene

Genes around FOXD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXD2-AS1 Gene

Proteins for FOXD2-AS1 Gene

Post-translational modifications for FOXD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOXD2-AS1 Gene

Domains & Families for FOXD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOXD2-AS1 Gene

Function for FOXD2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOXD2-AS1 Gene

Localization for FOXD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FOXD2-AS1 Gene

Pathways & Interactions for FOXD2-AS1 Gene

SuperPathways for FOXD2-AS1 Gene

No Data Available

Interacting Proteins for FOXD2-AS1 Gene

Gene Ontology (GO) - Biological Process for FOXD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOXD2-AS1 Gene

Transcripts for FOXD2-AS1 Gene

mRNA/cDNA for FOXD2-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXD2-AS1 Gene

FOXD2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXD2-AS1 Gene

No ASD Table

Relevant External Links for FOXD2-AS1 Gene

GeneLoc Exon Structure for
FOXD2-AS1
ECgene alternative splicing isoforms for
FOXD2-AS1

Expression for FOXD2-AS1 Gene

mRNA expression in normal human tissues for FOXD2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FOXD2-AS1 Gene

This gene is overexpressed in Colon - Transverse (x5.6), Artery - Aorta (x4.9), Nerve - Tibial (x4.6), and Artery - Tibial (x4.3).

SOURCE GeneReport for Unigene cluster for FOXD2-AS1 Gene:

Hs.127762
genes like me logo Genes that share expression patterns with FOXD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FOXD2-AS1 Gene

Orthologs for FOXD2-AS1 Gene

Evolution for FOXD2-AS1 Gene

ENSEMBL:
Gene Tree for FOXD2-AS1 (if available)
TreeFam:
Gene Tree for FOXD2-AS1 (if available)

No data available for Orthologs for FOXD2-AS1 Gene

Paralogs for FOXD2-AS1 Gene

No data available for Paralogs for FOXD2-AS1 Gene

Variants for FOXD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOXD2-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10890480 -- 47,433,891(+) AGCCG(A/C)AGATC intron-variant, nc-transcript-variant
rs111578196 -- 47,432,126(+) TCAAC(A/T)GTCCA intron-variant
rs113334139 -- 47,433,717(+) ATCTC(C/T)GCGCC intron-variant, nc-transcript-variant
rs114027823 -- 47,432,744(+) TGTCT(A/G)GGACT intron-variant, nc-transcript-variant
rs114307746 -- 47,433,615(+) GGGGC(C/G)GGGGA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FOXD2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1001779 CNV gain 25217958
nsv950710 CNV deletion 24416366

Relevant External Links for FOXD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOXD2-AS1 Gene

Disorders for FOXD2-AS1 Gene

Relevant External Links for FOXD2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXD2-AS1

No disorders were found for FOXD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXD2-AS1 Gene

Publications for FOXD2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FOXD2-AS1 Gene

Sources for FOXD2-AS1 Gene

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