FOXD1 Gene
protein-coding GIFtS : 47
GCID: GC05 M072743
forkhead box D1 (Previous symbol: FKHL8 )
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Aliasesfor FOXD1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Forkhead Box D1 1 2 FREAC-42 3 FKHL81 2 3 5 Forkhead Box Protein D12 FREAC41 2 3 Forkhead, Drosophila, Homolog-Like 82 Forkhead-Related Protein FKHL82 3 Forkhead-Like 82 Forkhead-Related Transcription Factor 42 3 Forkhead-Related Activator 42
Export aliases for FOXD1 gene to outside databases Previous GC identifers: GC05M071547 GC05M072975 GC05M072780 GC05M072826 GC05M072777 GC05M067947
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Summariesfor FOXD1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for FOXD1 : This intronless gene belongs to the forkhead family of transcription factors which is characterized by a distinct forkhead domain. The specific function of this gene has not yet been determined; however, it may play a role in tumor formation. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: FOXD1_HUMAN, Q16676 Function : Transcription factor required for formation of positional identity in the developing retina, regionalizationof the optic chiasm and morphogenesis of the kidney. Can neuralize ectodermal cells directly (By similarity)
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Genomic Viewsfor FOXD1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000005.9 NC_018916.1 NT_006713.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the FOXD1 gene promoter: Egr-3 Nkx2-5 FOXO4 FOXJ2 (long isoform) FOXO1a FOXJ2 FOXO1 ATF Other transcription factors Search SABiosciences Chromatin IP Primers for FOXD1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FOXD1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q12-q13 Ensembl cytogenetic band: 5q13.2 HGNC cytogenetic band: 5q12-q13 FOXD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M072743: view genomic region
(about GC identifiers )
Start:
72,740,654 bp from pter
End:
72,744,352 bp from pter
Size:
3,699 bases
Orientation:
minus strand
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Proteinsfor FOXD1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: FOXD1_HUMAN, Q16676 (See
protein sequence )Recommended Name: Forkhead box protein D1 Size : 465 amino acids; 46140 Da
Subcellular location : Nucleus
Secondary accessions : Q12949Explore the universe of human proteins at neXtProt for FOXD1: NX_Q16676 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q16676 FOXD1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_004463.1 ENSEMBL proteins: ENSP00000462795 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
FOXD1 for ontologies About GeneDecksing FOXD1 Antibody Products: Assay Products for FOXD1:
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Protein
Domains / Familiesfor FOXD1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
FOXD1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q16676 ProtoNet protein and cluster: Q16676
UniProtKB/Swiss-Prot: FOXD1_HUMAN, Q16676 Similarity : Contains 1 fork-head DNA-binding domain
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Functionfor FOXD1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: FOXD1_HUMAN, Q16676 Function : Transcription factor required for formation of positional identity in the developing retina, regionalizationof the optic chiasm and morphogenesis of the kidney. Can neuralize ectodermal cells directly (By similarity)
Genatlas biochemistry entry for FOXD1 : transcription factor-like 8,with a Drosophila homeo forkhead DNA binding domain homolog,kidney expressed (involved in kidney development) Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FOXD1 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FOXD1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FOXD1 (NM_004472 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FOXD1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FOXD1
Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
IDA 7957066 GO:0003690 double-stranded DNA binding
IBA -- GO:0003700 sequence-specific DNA binding transcription factor activity
TAS 8702877 GO:0003705 RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
IBA -- GO:0008134 transcription factor binding
IBA --
FOXD1 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for FOXD1 :Animal Models: 10 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Foxd1) :
FOXD1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor FOXD1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FOXD1 Gene Ontology (GO): 5/26 biological process terms (GO ID links to tree view) (see all 26 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0001658 branching involved in ureteric bud morphogenesis
-- -- GO:0001755 neural crest cell migration
IBA -- GO:0001822 kidney development
-- -- GO:0007389 pattern specification process
IBA -- GO:0007411 axon guidance
-- --
FOXD1 for ontologies About GeneDecksing
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Drugs & Compoundsfor FOXD1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for FOXD1 Search CenterWatch for drugs/clinical trials and news about FOXD1
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Transcriptsfor FOXD1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for FOXD1 gene: NM_004472.2 Unigene Cluster for FOXD1:
Forkhead box D1 Hs.519385 [show with all ESTs ] Unigene Representative Sequence: NM_004472 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000513595 ENST00000499003 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FOXD1 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FOXD1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FOXD1 (NM_004472 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FOXD1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FOXD1
Additional cDNA sequence: U13222.1 U59832.1
2 DOTS entries : DT.113053 DT.95264588
24/25 AceView cDNA sequences (see all 25 ):
BU728193 BM929966 AA885070 U13222 BU621287 AA341525 AA724254 CB112634 AW022278 AI739311 BV204581 U59832 BM999901 AA778677 CB149239 BG121021 BM706862 AI073371 AI818164 AA977269 NM_004472 AI823914 W46229 BI495774 GeneLoc Exon Structure
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Expression for FOXD1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section FOXD1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTTACACAAG
About this image FOXD1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See FOXD1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for FOXD1 SOURCE GeneReport for Unigene cluster: Hs.519385 SABiosciences Custom PCR Arrays for FOXD1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FOXD1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat FOXD1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FOXD1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FOXD1
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Orthologsfor FOXD1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for FOXD1 gene from 7/18 species (see all 18 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
FOXD11
forkhead box D1
77.81(n) 75(a)
 
396109 NM_205192.1 NP_990523.1
lizard (Anolis carolinensis)
Reptilia
--
--
33(a)
1 ↔ 1
2(15952341-15953942)
African clawed frog (Xenopus laevis)
Amphibia
foxd1-A2
forkhead box D1
80.17(n)
 
AJ011652.1
zebrafish (Danio rerio)
Actinopterygii
foxd1l1
forkhead box D1 like
64.71(n) 65.15(a)
 
405849 NM_212913.1 NP_998078.1
fruit fly (Drosophila melanogaster)
Insecta
fd59A3
embryonic morphogenesis transcription factor
83(a)
 
59B4 --
worm (Caenorhabditis elegans)
Secernentea
unc-1303
fork head domain protein
77(a)
 
II(11281899-11283574) --
rice (Oryza sativa)
Liliopsida
Os.182572
Oryza sativa (japonica cultivar-group) cDNA cloneJ more
71.23(n)
 
AK120944.1
ENSEMBL Gene Tree for FOXD1 (if available)TreeFam Gene Tree for FOXD1 (if available)
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Paralogsfor FOXD1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for FOXD1 gene FOXF1 2 FOXA2 2 FOXD4L1 2 FOXF2 2 FOXC2 2 FOXB1 2 FOXI2 2 FOXE3 2 FOXC1 2 FOXD4L2 2 FOXQ1 2 FOXD4L3 2 FOXA3 2 FOXD3 2 FOXD4L5 2 FOXD4L4 2 FOXE1 2 FOXL1 2 FOXA1 2 FOXB2 2 FOXI1 2 FOXD4L6 2 FOXS1 2 FOXL2 2 FOXD2 2 FOXD4 2 18/22 SIMAP similar genes for FOXD1 using alignment to 2 protein entries: FOXD1_HUMAN (see all proteins )
(see all similar genes ):FOXJ3 FOXN3 FOXA3 FOXC1 FOXB1 FOXI2 FOXL1 FOXD4L6 FOXD2 FOXD4L3 FOXD4L5 FOXD4L2 FOXD4L4 FOXL2 FOXS1 FOXD4L1 FOXE3 FOXF1
FOXD1 for paralogs About GeneDecksing
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Genomic Variantsfor FOXD1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 5 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for FOXD1 (72740654 - 72744352 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for FOXD1 2 CNVs : 64230 80956
SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor FOXD1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
FOXD1 for disorders About GeneDecksing
OMIM gene information: 601091
OMIM disorders : --1 disease for FOXD1 : About MalaCards wilms tumor Export disorders for FOXD1 gene to outside databases
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Publicationsfor FOXD1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for FOXD1 gene integrated from 9 sources : (articles sorted by number of sources associating them with FOXD1) Utopia : connect your pdf to the dynamic world of online information
Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending. (PubMed id 7957066) 1 , 2 , 3 Pierrou S....Carlsson P. (1994) Characterization of the human forkhead gene FREAC-4. Evidence for regulation by Wilms' tumor suppressor gene (WT-1) and p53. (PubMed id 8702877) 1 , 2 Ernstsson S.... Enerbaeck S. (1996) Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12). (PubMed id 8825632) 1 , 3 Larsson C....Carlsson P. (1995) Smad6s regulates plasminogen activator inhibitor-1 through a protein kinase C-beta-dependent up-regulation of transforming growth factor-beta. (PubMed id 15716278) 1 , 9 Berg D.T....Grinnell B.W. (2005)
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External Searches for FOXD1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing FOXD1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing FOXD1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing FOXD1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for FOXD1 gene: Search GeneIP for patents involving FOXD1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor FOXD1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for FOXD1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for FOXD1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FOXD1 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for FOXD1 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FOXD1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FOXD1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for FOXD1 OriGene Custom Protein Services for FOXD1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FOXD1 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FOXD1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FOXD1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat FOXD1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FOXD1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FOXD1
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FOXD1 Proteins, Antibodies, CLIAs, and ELISAs
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FOXD1
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Aliases for FOXD1
Databases for FOXD1
Disorders / Diseases for FOXD1
Domains / Families for FOXD1
Drugs / Compounds for FOXD1
Expression for FOXD1
Function for FOXD1
Genomic Views for FOXD1
Intellectual Property for FOXD1
Orthologs for FOXD1
Paralogs for FOXD1
Pathways / Interactions for FOXD1
Products for FOXD1
Proteins for FOXD1
Publications for FOXD1
Search Box for FOXD1
Summaries for FOXD1
Transcripts for FOXD1
Variants for FOXD1
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