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Aliases for FOXD1 Gene

Aliases for FOXD1 Gene

  • Forkhead Box D1 2 3
  • FKHL8 3 4 6
  • Forkhead-Related Transcription Factor 4 3 4
  • Forkhead-Related Protein FKHL8 3 4
  • FREAC-4 3 4
  • FREAC4 3 4
  • Forkhead, Drosophila, Homolog-Like 8 3
  • Forkhead-Related Activator 4 3
  • Forkhead Box Protein D1 3
  • Forkhead-Like 8 3

External Ids for FOXD1 Gene

Previous HGNC Symbols for FOXD1 Gene

  • FKHL8

Previous GeneCards Identifiers for FOXD1 Gene

  • GC05M071547
  • GC05M072975
  • GC05M072780
  • GC05M072826
  • GC05M072777
  • GC05M072743
  • GC05M067947

Summaries for FOXD1 Gene

Entrez Gene Summary for FOXD1 Gene

  • This gene belongs to the forkhead family of transcription factors which are characterized by a distinct forkhead domain. Studies of the orthologous mouse protein indicate that it functions in kidney development by promoting nephron progenitor differentiation, and it also functions in the development of the retina and optic chiasm. It may also regulate inflammatory reactions and prevent autoimmunity. [provided by RefSeq, Apr 2014]

GeneCards Summary for FOXD1 Gene

FOXD1 (Forkhead Box D1) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and DNA binding, bending. An important paralog of this gene is FOXE3.

UniProtKB/Swiss-Prot for FOXD1 Gene

  • Transcription factor required for formation of positional identity in the developing retina, regionalization of the optic chiasm and morphogenesis of the kidney. Can neuralize ectodermal cells directly (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXD1 Gene

Genomics for FOXD1 Gene

Regulatory Elements for FOXD1 Gene

Genomic Location for FOXD1 Gene

Start:
73,444,827 bp from pter
End:
73,448,527 bp from pter
Size:
3,701 bases
Orientation:
Minus strand

Genomic View for FOXD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FOXD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXD1 Gene

Proteins for FOXD1 Gene

  • Protein details for FOXD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q16676-FOXD1_HUMAN
    Recommended name:
    Forkhead box protein D1
    Protein Accession:
    Q16676
    Secondary Accessions:
    • Q12949

    Protein attributes for FOXD1 Gene

    Size:
    465 amino acids
    Molecular mass:
    46140 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FOXD1 Gene

Proteomics data for FOXD1 Gene at MOPED

Post-translational modifications for FOXD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FOXD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FOXD1 Gene

Domains for FOXD1 Gene

Gene Families for FOXD1 Gene

HGNC:
  • FOX :Forkhead boxes

Protein Domains for FOXD1 Gene

Suggested Antigen Peptide Sequences for FOXD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q16676

UniProtKB/Swiss-Prot:

FOXD1_HUMAN :
  • Q16676
Domain:
  • Contains 1 fork-head DNA-binding domain.
genes like me logo Genes that share domains with FOXD1: view

Function for FOXD1 Gene

Molecular function for FOXD1 Gene

GENATLAS Biochemistry: transcription factor-like 8,with a Drosophila homeo forkhead DNA binding domain homolog,kidney expressed (involved in kidney development)
UniProtKB/Swiss-Prot Function: Transcription factor required for formation of positional identity in the developing retina, regionalization of the optic chiasm and morphogenesis of the kidney. Can neuralize ectodermal cells directly (By similarity).

Gene Ontology (GO) - Molecular Function for FOXD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding IEA --
GO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription IEA --
GO:0003677 DNA binding IDA 7957066
GO:0003700 sequence-specific DNA binding transcription factor activity TAS 8702877
GO:0008301 DNA binding, bending IDA 7957066
genes like me logo Genes that share ontologies with FOXD1: view
genes like me logo Genes that share phenotypes with FOXD1: view

miRNA for FOXD1 Gene

miRTarBase miRNAs that target FOXD1

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for FOXD1 Gene

Localization for FOXD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FOXD1 Gene

Gene Ontology (GO) - Cellular Components for FOXD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IC 7957066
genes like me logo Genes that share ontologies with FOXD1: view

No data available for Subcellular locations from COMPARTMENTS for FOXD1 Gene

Pathways for FOXD1 Gene

SuperPathways for FOXD1 Gene

No Data Available

Interacting Proteins for FOXD1 Gene

Gene Ontology (GO) - Biological Process for FOXD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001658 branching involved in ureteric bud morphogenesis --
GO:0001822 kidney development --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated --
GO:0007411 axon guidance IEA --
genes like me logo Genes that share ontologies with FOXD1: view

No data available for Pathways by source for FOXD1 Gene

Transcripts for FOXD1 Gene

mRNA/cDNA for FOXD1 Gene

(25) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXD1 Gene

Forkhead box D1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FOXD1 Gene

No ASD Table

Relevant External Links for FOXD1 Gene

GeneLoc Exon Structure for
FOXD1
ECgene alternative splicing isoforms for
FOXD1

Expression for FOXD1 Gene

mRNA expression in normal human tissues for FOXD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FOXD1 Gene

This gene is overexpressed in Nerve - Tibial (9.7), Testis (5.6), and Esophagus - Muscularis (4.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FOXD1 Gene

SOURCE GeneReport for Unigene cluster for FOXD1 Gene Hs.519385

genes like me logo Genes that share expressions with FOXD1: view

No data available for mRNA Expression by UniProt/SwissProt for FOXD1 Gene

Orthologs for FOXD1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for FOXD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FOXD1 35
  • 98.85 (n)
  • 98.52 (a)
mouse
(Mus musculus)
Mammalia Foxd1 35
  • 81.56 (n)
  • 82.07 (a)
Foxd1 16
Foxd1 36
  • 53 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FOXD1 36
  • 48 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Foxd1 35
  • 81.56 (n)
  • 81.46 (a)
lizard
(Anolis carolinensis)
Reptilia FOXD1 36
  • 46 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia foxd1-A 35
zebrafish
(Danio rerio)
Actinopterygii FOXD1 36
  • 39 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta fd59A 36
  • 27 (a)
OneToMany
fd59A 37
  • 83 (a)
worm
(Caenorhabditis elegans)
Secernentea unc-130 36
  • 32 (a)
OneToMany
unc-130 37
  • 77 (a)
rice
(Oryza sativa)
Liliopsida Os.18257 35
wheat
(Triticum aestivum)
Liliopsida Ta.7992 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 25 (a)
ManyToMany
CSA.2032 36
  • 25 (a)
ManyToMany
Species with no ortholog for FOXD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)

Evolution for FOXD1 Gene

ENSEMBL:
Gene Tree for FOXD1 (if available)
TreeFam:
Gene Tree for FOXD1 (if available)

Paralogs for FOXD1 Gene

Selected SIMAP similar genes for FOXD1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with FOXD1: view

Variants for FOXD1 Gene

Sequence variations from dbSNP and Humsavar for FOXD1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs961935 -- 73,446,138(+) CTGTT(C/G)TTAAA downstream-variant-500B
rs1052207 -- 73,447,829(+) TTGAG(C/T)GAGAG synonymous-codon, reference
rs2972191 -- 73,447,055(+) GAGAC(C/T)GAGGA reference, synonymous-codon
rs3734036 -- 73,448,642(-) GCTCC(A/G)AGAGG upstream-variant-2KB
rs6865841 -- 73,448,907(+) CACCC(G/T)TAGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FOXD1 Gene

Variant ID Type Subtype PubMed ID
dgv949n67 CNV Gain 20364138
nsv4875 CNV Loss 18451855
nsv823101 CNV Gain 20364138
esv27844 CNV Loss 19812545

Relevant External Links for FOXD1 Gene

HapMap Linkage Disequilibrium report
FOXD1
Human Gene Mutation Database (HGMD)
FOXD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FOXD1 Gene

Disorders for FOXD1 Gene

No disorders were found for FOXD1 Gene.

No data available for UniProtKB/Swiss-Prot for FOXD1 Gene

Publications for FOXD1 Gene

  1. Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending. (PMID: 7957066) Pierrou S. … Carlsson P. (EMBO J. 1994) 2 3 4
  2. Characterization of the human forkhead gene FREAC-4. Evidence for regulation by Wilms' tumor suppressor gene (WT-1) and p53. (PMID: 8702877) Ernstsson S. … Enerbaeck S. (J. Biol. Chem. 1996) 3 4
  3. Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12). (PMID: 8825632) Larsson C. … Carlsson P. (Genomics 1995) 2 3
  4. Smad6s regulates plasminogen activator inhibitor-1 through a protein kinase C-beta-dependent up-regulation of transforming growth factor-beta. (PMID: 15716278) Berg D.T. … Grinnell B.W. (J. Biol. Chem. 2005) 3 23
  5. Human FOX gene family (Review). (PMID: 15492844) Katoh M. … Katoh M. (Int. J. Oncol. 2004) 3

Products for FOXD1 Gene

Sources for FOXD1 Gene

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