Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FOXB1 Gene

Aliases for FOXB1 Gene

  • Forkhead Box B1 2 3 5
  • Transcription Factor FKH-5 3 4
  • FKH5 3 4
  • Forkhead Box Protein B1 3
  • HFKH-5 3

External Ids for FOXB1 Gene

Previous GeneCards Identifiers for FOXB1 Gene

  • GC15P055855
  • GC15P053345
  • GC15P057876
  • GC15P058013
  • GC15P058084
  • GC15P060296
  • GC15P037118

Summaries for FOXB1 Gene

GeneCards Summary for FOXB1 Gene

FOXB1 (Forkhead Box B1) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and RNA polymerase II transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is FOXB2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOXB1 Gene

Genomics for FOXB1 Gene

Regulatory Elements for FOXB1 Gene

Enhancers for FOXB1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F059918 1.1 Ensembl ENCODE 12.2 -84.5 -84523 1.5 CTCF PKNOX1 EBF1 RAD21 HIC1 ZNF324 PATZ1 SCRT2 EED PRDM10 FOXB1 GC15P059937 DDX18P2
GH15F059886 1.1 Ensembl ENCODE 10.3 -118.1 -118122 0.2 PKNOX1 INSM2 ZNF76 KLF17 FEZF1 ZNF2 KLF7 ZNF391 ZNF263 OVOL3 FOXB1 DDX18P2 GC15P059937
GH15F059917 0.8 ENCODE 12.2 -86.5 -86506 0.2 CTCF TEAD4 MAX ZNF2 RAD21 ZFHX2 GLIS2 PATZ1 SMC3 KLF7 FOXB1 GC15P059937 DDX18P2
GH15F059975 0.7 Ensembl ENCODE 12.2 -27.9 -27922 1.4 MAX MYC GABPA FOXB1 NMNAT1P5
GH15F060026 0.5 ENCODE 11.8 +22.5 22495 0.2 ZFHX2 PKNOX1 GFI1B FOXB1 LOC105370838
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOXB1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FOXB1 Gene

Chromosome:
15
Start:
60,004,222 bp from pter
End:
60,061,730 bp from pter
Size:
57,509 bases
Orientation:
Plus strand

Genomic View for FOXB1 Gene

Genes around FOXB1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOXB1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOXB1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOXB1 Gene

Proteins for FOXB1 Gene

  • Protein details for FOXB1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q99853-FOXB1_HUMAN
    Recommended name:
    Forkhead box protein B1
    Protein Accession:
    Q99853
    Secondary Accessions:
    • O60652
    • O75917
    • Q14CL2

    Protein attributes for FOXB1 Gene

    Size:
    325 amino acids
    Molecular mass:
    34978 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FOXB1 Gene

Post-translational modifications for FOXB1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FOXB1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FOXB1 Gene

Domains & Families for FOXB1 Gene

Gene Families for FOXB1 Gene

Protein Domains for FOXB1 Gene

Suggested Antigen Peptide Sequences for FOXB1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q99853

UniProtKB/Swiss-Prot:

FOXB1_HUMAN :
  • Contains 1 fork-head DNA-binding domain.
Domain:
  • Contains 1 fork-head DNA-binding domain.
genes like me logo Genes that share domains with FOXB1: view

Function for FOXB1 Gene

Molecular function for FOXB1 Gene

GENATLAS Biochemistry:
transcription factor-like 5,with a Drosophila homeo forkhead DNA binding domain homolog

Gene Ontology (GO) - Molecular Function for FOXB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA --
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IEA --
GO:0005515 protein binding IPI 25416956
GO:0043565 sequence-specific DNA binding ISS,IBA --
genes like me logo Genes that share ontologies with FOXB1: view
genes like me logo Genes that share phenotypes with FOXB1: view

Animal Models for FOXB1 Gene

MGI Knock Outs for FOXB1:

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FOXB1 Gene

Localization for FOXB1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FOXB1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FOXB1 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for FOXB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus ISS,IBA --
genes like me logo Genes that share ontologies with FOXB1: view

Pathways & Interactions for FOXB1 Gene

SuperPathways for FOXB1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FOXB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001655 urogenital system development IEA --
GO:0001756 somitogenesis IEA,ISS --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006357 regulation of transcription from RNA polymerase II promoter IEA --
genes like me logo Genes that share ontologies with FOXB1: view

No data available for Pathways by source and SIGNOR curated interactions for FOXB1 Gene

Transcripts for FOXB1 Gene

mRNA/cDNA for FOXB1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FOXB1 Gene

Forkhead box B1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FOXB1 Gene

No ASD Table

Relevant External Links for FOXB1 Gene

GeneLoc Exon Structure for
FOXB1
ECgene alternative splicing isoforms for
FOXB1

Expression for FOXB1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FOXB1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FOXB1 Gene

This gene is overexpressed in Brain - Hypothalamus (x16.0), Brain - Substantia nigra (x14.8), Testis (x8.3), and Brain - Spinal cord (cervical c-1) (x7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for FOXB1 Gene



NURSA nuclear receptor signaling pathways regulating expression of FOXB1 Gene:

FOXB1

SOURCE GeneReport for Unigene cluster for FOXB1 Gene:

Hs.734475
genes like me logo Genes that share expression patterns with FOXB1: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FOXB1 Gene

Orthologs for FOXB1 Gene

This gene was present in the common ancestor of animals.

Orthologs for FOXB1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FOXB1 34 35
  • 100 (n)
oppossum
(Monodelphis domestica)
Mammalia FOXB1 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FOXB1 34 35
  • 94.46 (n)
cow
(Bos Taurus)
Mammalia FOXB1 34 35
  • 92.51 (n)
mouse
(Mus musculus)
Mammalia Foxb1 34 16 35
  • 92 (n)
chicken
(Gallus gallus)
Aves FOXB1 34 35
  • 89.58 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia foxb1 34
  • 76.98 (n)
African clawed frog
(Xenopus laevis)
Amphibia fkh-5 34
zebrafish
(Danio rerio)
Actinopterygii foxb1b 35
  • 80 (a)
OneToMany
foxb1a 34 35 35
  • 79.69 (n)
foxb1.2 34
fruit fly
(Drosophila melanogaster)
Insecta fd96Ca 36 35
  • 84 (a)
fd96Cb 36 35
  • 73 (a)
fd64A 36
  • 60 (a)
worm
(Caenorhabditis elegans)
Secernentea lin-31 36 35
  • 77 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 48 (a)
ManyToMany
-- 35
  • 30 (a)
ManyToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.376 34
Species where no ortholog for FOXB1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FOXB1 Gene

ENSEMBL:
Gene Tree for FOXB1 (if available)
TreeFam:
Gene Tree for FOXB1 (if available)

Paralogs for FOXB1 Gene

(11) SIMAP similar genes for FOXB1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FOXB1: view

Variants for FOXB1 Gene

Sequence variations from dbSNP and Humsavar for FOXB1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs111419806 -- 60,002,975(+) GCGGG(A/G)TCGAC upstream-variant-2KB
rs113312088 -- 60,006,189(+) ACCTG(A/G)GCCGA downstream-variant-500B
rs113886398 -- 60,003,578(+) ATTTT(-/T)AAAAA upstream-variant-2KB
rs138019772 -- 60,004,726(+) TTCGC(C/G)GGCTT intron-variant
rs139129563 -- 60,005,890(+) CCCAG(A/C)GAAAC reference, missense

Structural Variations from Database of Genomic Variants (DGV) for FOXB1 Gene

Variant ID Type Subtype PubMed ID
nsv1554 CNV deletion 18451855
nsv7266 OTHER inversion 18451855
nsv833028 CNV gain 17160897
nsv951968 CNV deletion 24416366

Variation tolerance for FOXB1 Gene

Residual Variation Intolerance Score: 31.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.13; 22.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FOXB1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOXB1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FOXB1 Gene

Disorders for FOXB1 Gene

Relevant External Links for FOXB1

Genetic Association Database (GAD)
FOXB1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOXB1

No disorders were found for FOXB1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOXB1 Gene

Publications for FOXB1 Gene

  1. Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. (PMID: 25609649) Li X. … Chen J. (Mol. Syst. Biol. 2015) 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3 64
  4. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 46 64
  5. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64

Products for FOXB1 Gene

Sources for FOXB1 Gene

Content
Loading form....