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FOLR4 Gene

protein-coding   GIFtS: 41
GCID: GC11P094038

Folate Receptor 4, Delta (Putative)

(Previous name: folate receptor 4 (delta) homolog (mouse))
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Folate Receptor 4, Delta (Putative)1 2     Folate Receptor 4 (Delta) Homolog2
FR-delta2 3     Probable Folate Receptor Delta2
Folate Receptor 4 (Delta) Homolog (Mouse)1     Folate Receptor 43
Folbp32     

External Ids:    HGNC: 325651   Entrez Gene: 3902432   Ensembl: ENSG000001835607   UniProtKB: A6ND013   

Export aliases for FOLR4 gene to outside databases

Previous GC identifers: GC11P093679 GC11P090108


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for FOLR4 Gene:
FOLR4 (folate receptor 4, delta (putative)) is a protein-coding gene. GO annotations related to this gene include folic acid binding. An important paralog of this gene is FOLR3.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NC_018922.2  NT_033899.9  
Regulatory elements:
   Regulatory transcription factor binding sites in the FOLR4 gene promoter:
         STAT1   NF-1   NF-1/L   Egr-1   MyoD   Egr-4   GATA-2   Ik-2   POU2F1a   STAT3   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for FOLR4

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FOLR4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q21   Ensembl cytogenetic band:  11q21   HGNC cytogenetic band: 11q14

FOLR4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FOLR4 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P094038:  view genomic region     (about GC identifiers)

Start:
94,038,759 bp from pter      End:
94,040,887 bp from pter
Size:
2,129 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: FOLR4_HUMAN, A6ND01 (See protein sequence)
Recommended Name: Probable folate receptor delta precursor  
Size: 250 amino acids; 28672 Da
Alternative splicing: 2 isoforms:  A6ND01-1   A6ND01-2   (No experimental confirmation available. Gene prediction based on similarity to orthologs)

Explore the universe of human proteins at neXtProt for FOLR4: NX_A6ND01

Explore proteomics data for FOLR4 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn73

  • See FOLR4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001186135.1  
    ENSEMBL proteins: 
     ENSP00000416935   ENSP00000332963  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR018143 Folate_rcpt-like
     IPR004269 Folate_rcpt

    Graphical View of Domain Structure for InterPro Entry A6ND01

    ProtoNet protein and cluster: A6ND01

    UniProtKB/Swiss-Prot: FOLR4_HUMAN, A6ND01
    Similarity: Belongs to the folate receptor family


    Find genes that share domains with FOLR4           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005542folic acid binding IEA--
         
    Find genes that share ontologies with FOLR4           About GenesLikeMe


    Phenotypes:
         1 MGI mutant phenotype (inferred from 2 alleles(MGI details for Folr4):
     normal 

    Find genes that share phenotypes with FOLR4           About GenesLikeMe

    Animal Models:
         MGI mouse knock-out Folr4tm1.1Salb for FOLR4

       genOway: Develop your customized and physiologically relevant rodent model for FOLR4

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    FOLR4_HUMAN, A6ND01: Secreted (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3
    cytosol1
    golgi apparatus1
    mitochondrion1
    nucleus1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--

    Find genes that share ontologies with FOLR4           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for FOLR4 About    
    See pathways by source

    SuperPathContained pathways About
    1Endocytosis
    Endocytosis


    Find genes that share SuperPaths with FOLR4           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways



    1 Kegg Pathway  (Kegg details for FOLR4):
        Endocytosis

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FOLR4
    Interactions:

        Search GeneGlobe Interaction Network for FOLR4

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for FOLR4

    1 HMDB Compound for FOLR4    About this table
    CompoundSynonyms CAS #PubMed Ids
    Folic acidAcifolic (see all 37)59-30-3--



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for FOLR4 gene (2 alternative transcripts): 
    NM_001080486.1  NM_001199206.1  

    Unigene Cluster for FOLR4:

    Folate receptor 4, delta (putative)
    Hs.553758  [show with all ESTs]
    Unigene Representative Sequence: NM_001199206
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000440961(uc021qou.1) ENST00000328458
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    2 DOTS entries:

    DT.120708369  DT.120708371 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    FOLR4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    FOLR4 Expression
    About this image

    FOLR4 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    FOLR4 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.553758
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for FOLR4 gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Folr41 , 5 folate receptor 4 (delta)1, 5 77.87(n)1
    68.88(a)1
      9 (4.42 cM)5
    649311  NM_022888.21  NP_075026.11 
     148858145 
    chicken
    (Gallus gallus)
    Aves FOLR16
    Gallus gallus folate receptor 1 (adult) (FOLR1), m...
    49(a)
    1 → many
    1(193685559-193688956) ENSGALG00000017343
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    59(a)
    1 → many
    AAWZ02038598(1643-1834)
    zebrafish
    (Danio rerio)
    Actinopterygii FOLR16
    folate receptor 1 (adult)
    48(a)
    1 → many
    15(46932044-46938985) ENSDARG00000075659


    ENSEMBL Gene Tree for FOLR4 (if available)
    TreeFam Gene Tree for FOLR4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for FOLR4 gene
    FOLR32  FOLR12  FOLR22  
    3 SIMAP similar genes for FOLR4 using alignment to 2 protein entries:     FOLR4_HUMAN (see all proteins):
    FOLR1    FOLR2    FOLR3

    Find genes that share paralogs with FOLR4           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for FOLR4 (see all 142)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2003860291,2
    Cuntested194040707(+) GCGACA/GGAACA 2 Q R mis10--------
    rs1396588011,2
    C--94036815(+) TCACCA/GCTGAG 1 -- us2k10--------
    rs352267471,2
    C,F--94036987(+) TTAGTA/GTATGC 1 -- us2k19Minor allele frequency- G:0.21NA CSA WA EA 370
    rs118242731,2
    C,F,H--94037004(+) CATCAG/ATTGTA 1 -- us2k115Minor allele frequency- A:0.29NA WA CSA EA 522
    rs1828291911,2
    --94037040(+) TTCCAC/TTAAAA 1 -- us2k10--------
    rs3762801981,2
    C--94037049(+) AAAAAC/TCTTTT 1 -- us2k10--------
    rs1866871751,2
    --94037056(+) CTTTTA/CGTGTT 1 -- us2k10--------
    rs1915613631,2
    --94037128(+) AGAGAA/GAGAGA 1 -- us2k10--------
    rs1443005451,2
    --94037210(+) ATCCTA/GTCCAA 1 -- us2k10--------
    rs786794701,2
    C,F--94037211(+) TCCTAT/CCCAAG 1 -- us2k12Minor allele frequency- C:0.12NA EA 240

    HapMap Linkage Disequilibrium report for FOLR4 (94038759 - 94040887 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for FOLR4:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv523083CNV Gain19592680
    nsv832233CNV Gain17160897

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for FOLR4 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with FOLR4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of two putative novel folate receptor genes in humans and mouse. (PubMed id 11111049)1, 3 Spiegelstein O....Finnell R.H. (Gene 2000)
    2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 390243 HGNC: 32565 Ensembl:ENSG00000183560 euGenes: HUgn390243 ECgene: FOLR4 Kegg: 390243
    H-InvDB: FOLR4

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for FOLR4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for FOLR4 gene:
    Search GeneIP for patents involving FOLR4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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