Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FOCAD-AS1 Gene

Subcategory (RNA class) for FOCAD-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FOCAD-AS1 Gene

  • FOCAD Antisense RNA 1 2 3 5

External Ids for FOCAD-AS1 Gene

Summaries for FOCAD-AS1 Gene

GeneCards Summary for FOCAD-AS1 Gene

FOCAD-AS1 (FOCAD Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOCAD-AS1 Gene

Genomics for FOCAD-AS1 Gene

Regulatory Elements for FOCAD-AS1 Gene

Enhancers for FOCAD-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G020682 1.1 ENCODE 6.6 +0.1 138 3.4 PKNOX1 FOXA2 CREB3L1 AGO1 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 FOCAD MIR491 FOCAD-AS1
GH09G020678 0.7 ENCODE 6.3 +5.8 5775 1.0 GTF2F1 ESRRA PKNOX1 MAX CEBPB ZNF398 JUND GATA2 TARDBP NR2F6 FOCAD MIR491 FOCAD-AS1
GH09G020658 0.9 ENCODE 0.3 +26.0 25966 0.9 HDGF PKNOX1 NFRKB ZNF76 SIN3A ZNF2 ZBTB40 YY1 ZNF335 KLF7 FOCAD FOCAD-AS1
GH09G020660 0.2 Ensembl 0.3 +24.5 24450 0.2 FOCAD FOCAD-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FOCAD-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FOCAD-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000233823 250 2201 PKNOX1 FOXA2 CREB3L1 AGO1 ARID4B SIN3A ZNF2 ZNF143 ZNF207 FOS

Genomic Location for FOCAD-AS1 Gene

Chromosome:
9
Start:
20,683,302 bp from pter
End:
20,684,750 bp from pter
Size:
1,449 bases
Orientation:
Minus strand

Genomic View for FOCAD-AS1 Gene

Genes around FOCAD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOCAD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOCAD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOCAD-AS1 Gene

Proteins for FOCAD-AS1 Gene

Post-translational modifications for FOCAD-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOCAD-AS1 Gene

Domains & Families for FOCAD-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOCAD-AS1 Gene

Function for FOCAD-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOCAD-AS1 Gene

Localization for FOCAD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FOCAD-AS1 Gene

Pathways & Interactions for FOCAD-AS1 Gene

SuperPathways for FOCAD-AS1 Gene

No Data Available

Interacting Proteins for FOCAD-AS1 Gene

Gene Ontology (GO) - Biological Process for FOCAD-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOCAD-AS1 Gene

Drugs & Compounds for FOCAD-AS1 Gene

No Compound Related Data Available

Transcripts for FOCAD-AS1 Gene

mRNA/cDNA for FOCAD-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FOCAD-AS1 Gene

No ASD Table

Relevant External Links for FOCAD-AS1 Gene

GeneLoc Exon Structure for
FOCAD-AS1
ECgene alternative splicing isoforms for
FOCAD-AS1

Expression for FOCAD-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FOCAD-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FOCAD-AS1 Gene

This gene is overexpressed in Adrenal Gland (x6.1), Heart - Left Ventricle (x4.2), and Muscle - Skeletal (x4.0).
genes like me logo Genes that share expression patterns with FOCAD-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FOCAD-AS1 Gene

Orthologs for FOCAD-AS1 Gene

Evolution for FOCAD-AS1 Gene

ENSEMBL:
Gene Tree for FOCAD-AS1 (if available)
TreeFam:
Gene Tree for FOCAD-AS1 (if available)

No data available for Orthologs for FOCAD-AS1 Gene

Paralogs for FOCAD-AS1 Gene

No data available for Paralogs for FOCAD-AS1 Gene

Variants for FOCAD-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOCAD-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000156884 -- 20,686,259(+) TCAAG(G/T)GATTC intron-variant, upstream-variant-2KB
rs1000246416 -- 20,683,020(+) TCGGC(C/T)TCCCA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000478682 -- 20,684,289(+) CAGAA(A/G)GGAGG intron-variant, utr-variant-5-prime
rs1000641168 -- 20,683,191(+) AAATG(A/G)GAAAC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000728514 -- 20,686,461(+) GGTTA(A/C)TGGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FOCAD-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2764150 CNV gain+loss 21179565
nsv1028928 CNV loss 25217958
nsv1032837 CNV loss 25217958
nsv613747 CNV loss 21841781

Relevant External Links for FOCAD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOCAD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOCAD-AS1 Gene

Disorders for FOCAD-AS1 Gene

Relevant External Links for FOCAD-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOCAD-AS1

No disorders were found for FOCAD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOCAD-AS1 Gene

Publications for FOCAD-AS1 Gene

No publications were found for FOCAD-AS1 Gene.

Products for FOCAD-AS1 Gene

Sources for FOCAD-AS1 Gene

Content
Loading form....