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Aliases for FOCAD-AS1 Gene

Subcategory (RNA class) for FOCAD-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FOCAD-AS1 Gene

  • FOCAD Antisense RNA 1 2 3 5

External Ids for FOCAD-AS1 Gene

Summaries for FOCAD-AS1 Gene

GeneCards Summary for FOCAD-AS1 Gene

FOCAD-AS1 (FOCAD Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FOCAD-AS1 Gene

Genomics for FOCAD-AS1 Gene

Regulatory Elements for FOCAD-AS1 Gene

Enhancers for FOCAD-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F020682 0.6 ENCODE 6.7 +0.1 138 3.4 ATF1 PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 BRCA1 ZNF48 YY1 ZNF121 FOCAD MIR491 FOCAD-AS1
GH09F020678 1.1 Ensembl ENCODE 6.2 +5.7 5739 1.1 GTF2F1 PKNOX1 ESRRA CEBPB MAX JUND TARDBP NR2F6 FOS TCF7L2 FOCAD MIR491 FOCAD-AS1
GH09F020692 0.8 Ensembl 6.2 -8.2 -8152 1.0 ELF3 ATF1 MLX ARID4B FEZF1 DMAP1 THRB RARA ZNF766 GATA4 MIR491 FOCAD FOCAD-AS1 GC09P020716
GH09F020700 0.5 Ensembl 0.3 -16.4 -16351 0.6 FEZF1 RAD21 PRDM1 FOCAD FOCAD-AS1 GC09P020716
GH09F020662 0.7 Ensembl 0.3 +22.4 22350 0.4 ZNF335 SMARCA4 WRNIP1 ZIC2 SP7 MLLT3 MIR491 FOCAD FOCAD-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FOCAD-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FOCAD-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001301212 250 2601 PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 BRCA1 ZNF48 ZNF121 GLIS2 GATA2

Genomic Location for FOCAD-AS1 Gene

Chromosome:
9
Start:
20,683,302 bp from pter
End:
20,684,750 bp from pter
Size:
1,449 bases
Orientation:
Minus strand

Genomic View for FOCAD-AS1 Gene

Genes around FOCAD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FOCAD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FOCAD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FOCAD-AS1 Gene

Proteins for FOCAD-AS1 Gene

Post-translational modifications for FOCAD-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FOCAD-AS1 Gene

Domains & Families for FOCAD-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FOCAD-AS1 Gene

Function for FOCAD-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FOCAD-AS1 Gene

Localization for FOCAD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FOCAD-AS1 Gene

Pathways & Interactions for FOCAD-AS1 Gene

SuperPathways for FOCAD-AS1 Gene

No Data Available

Interacting Proteins for FOCAD-AS1 Gene

Gene Ontology (GO) - Biological Process for FOCAD-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FOCAD-AS1 Gene

Transcripts for FOCAD-AS1 Gene

mRNA/cDNA for FOCAD-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FOCAD-AS1 Gene

No ASD Table

Relevant External Links for FOCAD-AS1 Gene

GeneLoc Exon Structure for
FOCAD-AS1
ECgene alternative splicing isoforms for
FOCAD-AS1

Expression for FOCAD-AS1 Gene

mRNA expression in normal human tissues for FOCAD-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FOCAD-AS1 Gene

This gene is overexpressed in Adrenal Gland (x6.1), Heart - Left Ventricle (x4.2), and Muscle - Skeletal (x4.0).
genes like me logo Genes that share expression patterns with FOCAD-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FOCAD-AS1 Gene

Orthologs for FOCAD-AS1 Gene

Evolution for FOCAD-AS1 Gene

ENSEMBL:
Gene Tree for FOCAD-AS1 (if available)
TreeFam:
Gene Tree for FOCAD-AS1 (if available)

No data available for Orthologs for FOCAD-AS1 Gene

Paralogs for FOCAD-AS1 Gene

No data available for Paralogs for FOCAD-AS1 Gene

Variants for FOCAD-AS1 Gene

Sequence variations from dbSNP and Humsavar for FOCAD-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10117757 -- 20,685,151(+) GTTTT(A/C)TTCCA intron-variant, upstream-variant-2KB
rs10117816 -- 20,685,336(+) GTATA(A/G)TTTTG intron-variant, upstream-variant-2KB
rs10118836 -- 20,686,718(+) TCTAT(A/T)GATCT intron-variant, upstream-variant-2KB
rs10123948 -- 20,685,098(+) TGGAT(G/T)CCTTA intron-variant, upstream-variant-2KB
rs10964657 -- 20,685,533(+) TCCTG(C/T)GTAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FOCAD-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2764150 CNV gain+loss 21179565
nsv1028928 CNV loss 25217958
nsv1032837 CNV loss 25217958
nsv613747 CNV loss 21841781

Relevant External Links for FOCAD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FOCAD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FOCAD-AS1 Gene

Disorders for FOCAD-AS1 Gene

Relevant External Links for FOCAD-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FOCAD-AS1

No disorders were found for FOCAD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FOCAD-AS1 Gene

Publications for FOCAD-AS1 Gene

No publications were found for FOCAD-AS1 Gene.

Products for FOCAD-AS1 Gene

Sources for FOCAD-AS1 Gene

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