Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FNTAP1 Gene

Aliases for FNTAP1 Gene

  • Farnesyltransferase, CAAX Box, Alpha Pseudogene 1 2 3
  • Farnesyltransferase, CAAX Box, Alpha-Like 1 2 3
  • AP003097.1 5
  • FNTAL1 3

External Ids for FNTAP1 Gene

Previous HGNC Symbols for FNTAP1 Gene

  • FNTAL1

Previous GeneCards Identifiers for FNTAP1 Gene

  • GC11P085907

Summaries for FNTAP1 Gene

GeneCards Summary for FNTAP1 Gene

FNTAP1 (Farnesyltransferase, CAAX Box, Alpha Pseudogene 1) is a Pseudogene.

Additional gene information for FNTAP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FNTAP1 Gene

Genomics for FNTAP1 Gene

Regulatory Elements for FNTAP1 Gene

Enhancers for FNTAP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H086195 1.2 ENCODE dbSUPER 0.7 +1.5 1522 2 HDAC1 TBP ATF1 TBL1XR1 NFRKB ZNF133 FEZF1 CHAMP1 GATA2 FOS RNU6-560P PICALM HIKESHI CREBZF FNTAP1 ENSG00000276669
GH11H086201 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.5 7470 2 HDGF PKNOX1 ATF1 ARNT YY1 ZNF766 ELK1 KLF7 ATF7 RUNX3 PICALM RNU6-560P EED HIKESHI CCDC81 FNTAP1 ENSG00000276669
GH11H086206 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.8 10758 1 SOX13 CTCF TFAP4 FOXA2 MAX CEBPG RAD21 TEAD3 SMC3 NR2F6 EED RNU6-560P HIKESHI PICALM ENSG00000276669 FNTAP1
GH11H086214 0.8 ENCODE 0.4 +19.8 19803 0 HDGF TBL1XR1 BMI1 BATF ZNF143 ZNF207 ATF7 ETV6 RUNX3 CREM PICALM RNU6-560P EED ENSG00000276669 FNTAP1
GH11H086205 0.5 Ensembl dbSUPER 0.4 +10.0 9970 0 RNU6-560P EED FNTAP1 ENSG00000276669
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FNTAP1 on UCSC Golden Path with GeneCards custom track

Promoters for FNTAP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000042952 -1531 401 ARNT ARID4B SIN3A YY1 ZNF766 ZNF143 ZNF207 DEK JUNB REST

Genomic Location for FNTAP1 Gene

Chromosome:
11
Start:
86,195,131 bp from pter
End:
86,196,778 bp from pter
Size:
1,648 bases
Orientation:
Plus strand

Genomic View for FNTAP1 Gene

Genes around FNTAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FNTAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FNTAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FNTAP1 Gene

Proteins for FNTAP1 Gene

Post-translational modifications for FNTAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FNTAP1 Gene

Domains & Families for FNTAP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FNTAP1 Gene

Function for FNTAP1 Gene

Phenotypes From GWAS Catalog for FNTAP1 Gene

Phenotypes for FNTAP1 Gene

GenomeRNAi human phenotypes for FNTAP1:
genes like me logo Genes that share phenotypes with FNTAP1: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FNTAP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FNTAP1 Gene

Localization for FNTAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FNTAP1 Gene

Pathways & Interactions for FNTAP1 Gene

SuperPathways for FNTAP1 Gene

No Data Available

Interacting Proteins for FNTAP1 Gene

Gene Ontology (GO) - Biological Process for FNTAP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FNTAP1 Gene

Drugs & Compounds for FNTAP1 Gene

No Compound Related Data Available

Transcripts for FNTAP1 Gene

mRNA/cDNA for FNTAP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FNTAP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FNTAP1 Gene

No ASD Table

Relevant External Links for FNTAP1 Gene

GeneLoc Exon Structure for
FNTAP1
ECgene alternative splicing isoforms for
FNTAP1

Expression for FNTAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FNTAP1 Gene

mRNA differential expression in normal tissues according to GTEx for FNTAP1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of FNTAP1 Gene:

FNTAP1
genes like me logo Genes that share expression patterns with FNTAP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FNTAP1 Gene

Orthologs for FNTAP1 Gene

Evolution for FNTAP1 Gene

ENSEMBL:
Gene Tree for FNTAP1 (if available)
TreeFam:
Gene Tree for FNTAP1 (if available)

No data available for Orthologs for FNTAP1 Gene

Paralogs for FNTAP1 Gene

No data available for Paralogs for FNTAP1 Gene

Variants for FNTAP1 Gene

Relevant External Links for FNTAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FNTAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FNTAP1 Gene

Disorders for FNTAP1 Gene

No disorders were found for FNTAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FNTAP1 Gene

Publications for FNTAP1 Gene

  1. cDNA cloning of the two subunits of human CAAX farnesyltransferase and chromosomal mapping of FNTA and FNTB loci and related sequences. (PMID: 8276393) Andres DA … Francke U (Genomics 1993) 2 3 60
  2. Protein prenyltransferases: anchor size, pseudogenes and parasites. (PMID: 12956414) Maurer-Stroh S … Eisenhaber F (Biological chemistry 2003) 3 60

Products for FNTAP1 Gene

Sources for FNTAP1 Gene

Content
Loading form....