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Aliases for FNDC9 Gene

Aliases for FNDC9 Gene

  • Fibronectin Type III Domain Containing 9 2 3
  • C5orf40 3 4
  • Fibronectin Type-III Domain-Containing Protein C5orf40 3
  • Fibronectin Type III Domain-Containing Protein 9 3
  • Chromosome 5 Open Reading Frame 40 2

External Ids for FNDC9 Gene

Previous HGNC Symbols for FNDC9 Gene

  • C5orf40

Previous GeneCards Identifiers for FNDC9 Gene

  • GC05M156768

Summaries for FNDC9 Gene

GeneCards Summary for FNDC9 Gene

FNDC9 (Fibronectin Type III Domain Containing 9) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FNDC9 Gene

Genomics for FNDC9 Gene

Genomic Location for FNDC9 Gene

Start:
157,341,599 bp from pter
End:
157,345,721 bp from pter
Size:
4,123 bases
Orientation:
Minus strand

Genomic View for FNDC9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FNDC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FNDC9 Gene

No data available for Regulatory Elements for FNDC9 Gene

Proteins for FNDC9 Gene

  • Protein details for FNDC9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBE3-FNDC9_HUMAN
    Recommended name:
    Fibronectin type III domain-containing protein 9
    Protein Accession:
    Q8TBE3
    Secondary Accessions:
    • A8K0Y6

    Protein attributes for FNDC9 Gene

    Size:
    224 amino acids
    Molecular mass:
    25275 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FNDC9 Gene

Proteomics data for FNDC9 Gene at MOPED

Post-translational modifications for FNDC9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FNDC9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FNDC9 Gene

Domains for FNDC9 Gene

Gene Families for FNDC9 Gene

HGNC:
  • FN3 :Fibronectin type III domain containing

Protein Domains for FNDC9 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FNDC9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TBE3

UniProtKB/Swiss-Prot:

FNDC9_HUMAN :
  • Q8TBE3
Domain:
  • Contains 1 fibronectin type-III domain.
genes like me logo Genes that share domains with FNDC9: view

Function for FNDC9 Gene

Gene Ontology (GO) - Molecular Function for FNDC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with FNDC9: view

Phenotypes for FNDC9 Gene

GenomeRNAi human phenotypes for FNDC9:
genes like me logo Genes that share phenotypes with FNDC9: view

Animal Model Products

CRISPR Products

miRNA for FNDC9 Gene

miRTarBase miRNAs that target FNDC9

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for FNDC9 Gene

Localization for FNDC9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FNDC9 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for FNDC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FNDC9: view

No data available for Subcellular locations from COMPARTMENTS for FNDC9 Gene

Pathways for FNDC9 Gene

SuperPathways for FNDC9 Gene

No Data Available

Interacting Proteins for FNDC9 Gene

Gene Ontology (GO) - Biological Process for FNDC9 Gene

None

No data available for Pathways by source for FNDC9 Gene

Transcripts for FNDC9 Gene

mRNA/cDNA for FNDC9 Gene

(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(12) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FNDC9 Gene

Fibronectin type III domain containing 9:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FNDC9

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for FNDC9

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FNDC9 Gene

No ASD Table

Relevant External Links for FNDC9 Gene

GeneLoc Exon Structure for
FNDC9
ECgene alternative splicing isoforms for
FNDC9

Expression for FNDC9 Gene

mRNA expression in normal human tissues for FNDC9 Gene

mRNA differential expression in normal tissues according to GTEx for FNDC9 Gene

This gene is overexpressed in Brain - Hypothalamus (12.4), Brain - Nucleus accumbens (basal ganglia) (6.4), Pituitary (5.1), Brain - Frontal Cortex (BA9) (4.3), and Brain - Cortex (4.1).

SOURCE GeneReport for Unigene cluster for FNDC9 Gene Hs.437066

genes like me logo Genes that share expressions with FNDC9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FNDC9 Gene

Orthologs for FNDC9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FNDC9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FNDC9 35
  • 99.26 (n)
  • 99.11 (a)
FNDC9 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FNDC9 35
  • 87.54 (n)
  • 86.94 (a)
FNDC9 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FNDC9 35
  • 89.58 (n)
  • 92.41 (a)
FNDC9 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fndc9 35
  • 84.97 (n)
  • 85.27 (a)
Fndc9 16
Fndc9 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FNDC9 36
  • 62 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fndc9 35
  • 86.46 (n)
  • 86.61 (a)
chicken
(Gallus gallus)
Aves FNDC9 35
  • 56.74 (n)
  • 42.79 (a)
FNDC9 36
  • 34 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FNDC9 36
  • 27 (a)
OneToOne
Species with no ortholog for FNDC9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FNDC9 Gene

ENSEMBL:
Gene Tree for FNDC9 (if available)
TreeFam:
Gene Tree for FNDC9 (if available)

Paralogs for FNDC9 Gene

No data available for Paralogs for FNDC9 Gene

Variants for FNDC9 Gene

Sequence variations from dbSNP and Humsavar for FNDC9 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
VAR_047138 -
VAR_047139 -
VAR_047140 -

Structural Variations from Database of Genomic Variants (DGV) for FNDC9 Gene

Variant ID Type Subtype PubMed ID
nsv830526 CNV Loss 17160897

Relevant External Links for FNDC9 Gene

HapMap Linkage Disequilibrium report
FNDC9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FNDC9 Gene

Disorders for FNDC9 Gene

No disorders were found for FNDC9 Gene.

No data available for UniProtKB/Swiss-Prot for FNDC9 Gene

Publications for FNDC9 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for FNDC9 Gene

Sources for FNDC9 Gene

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