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Aliases for FNDC7 Gene

Aliases for FNDC7 Gene

  • Fibronectin Type III Domain Containing 7 2 3

External Ids for FNDC7 Gene

Previous GeneCards Identifiers for FNDC7 Gene

  • GC01P108978
  • GC01P109066
  • GC01P109255
  • GC01P107149

Summaries for FNDC7 Gene

GeneCards Summary for FNDC7 Gene

FNDC7 (Fibronectin Type III Domain Containing 7) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FNDC7 Gene

Genomics for FNDC7 Gene

Regulatory Elements for FNDC7 Gene

Genomic Location for FNDC7 Gene

Start:
108,712,657 bp from pter
End:
108,742,749 bp from pter
Size:
30,093 bases
Orientation:
Plus strand

Genomic View for FNDC7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FNDC7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FNDC7 Gene

Proteins for FNDC7 Gene

  • Protein details for FNDC7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VTL7-FNDC7_HUMAN
    Recommended name:
    Fibronectin type III domain-containing protein 7
    Protein Accession:
    Q5VTL7
    Secondary Accessions:
    • A1L468
    • E9PAZ5
    • Q6PF16
    • Q8NA51

    Protein attributes for FNDC7 Gene

    Size:
    733 amino acids
    Molecular mass:
    78236 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH57762.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI30422.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC04077.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAH72065.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for FNDC7 Gene

Proteomics data for FNDC7 Gene at MOPED

Post-translational modifications for FNDC7 Gene

  • Glycosylation at Asn230 and Asn433
  • Modification sites at PhosphoSitePlus

Other Protein References for FNDC7 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FNDC7 Gene

Domains for FNDC7 Gene

Gene Families for FNDC7 Gene

HGNC:
  • FN3 :Fibronectin type III domain containing

Protein Domains for FNDC7 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FNDC7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VTL7

UniProtKB/Swiss-Prot:

FNDC7_HUMAN :
  • Q5VTL7
Domain:
  • Contains 8 fibronectin type-III domains.
genes like me logo Genes that share domains with FNDC7: view

Function for FNDC7 Gene

Gene Ontology (GO) - Molecular Function for FNDC7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with FNDC7: view

Animal Model Products

miRNA for FNDC7 Gene

miRTarBase miRNAs that target FNDC7

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FNDC7

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FNDC7 Gene

Localization for FNDC7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FNDC7 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FNDC7 Gene COMPARTMENTS Subcellular localization image for FNDC7 gene
Compartment Confidence
extracellular 3
plasma membrane 2
cytoskeleton 1
endoplasmic reticulum 1
nucleus 1

Gene Ontology (GO) - Cellular Components for FNDC7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with FNDC7: view

Pathways for FNDC7 Gene

SuperPathways for FNDC7 Gene

No Data Available

Interacting Proteins for FNDC7 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000359034%0d%0a9606.ENSP00000249396%0d%0a
Selected Interacting proteins: ENSP00000359034 for FNDC7 Gene via STRING

Symbol External ID(s) Details
SIRT2

Gene Ontology (GO) - Biological Process for FNDC7 Gene

None

No data available for Pathways by source for FNDC7 Gene

Transcripts for FNDC7 Gene

mRNA/cDNA for FNDC7 Gene

(4) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FNDC7 Gene

Fibronectin type III domain containing 7:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FNDC7

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FNDC7 Gene

No ASD Table

Relevant External Links for FNDC7 Gene

GeneLoc Exon Structure for
FNDC7
ECgene alternative splicing isoforms for
FNDC7

Expression for FNDC7 Gene

mRNA expression in normal human tissues for FNDC7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FNDC7 Gene

This gene is overexpressed in Testis (12.7) and Brain - Hippocampus (4.3).

Protein differential expression in normal tissues for FNDC7 Gene

This gene is overexpressed in Esophagus (65.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FNDC7 Gene

SOURCE GeneReport for Unigene cluster for FNDC7 Gene Hs.258253

genes like me logo Genes that share expressions with FNDC7: view

Expression partners for FNDC7 Gene

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for FNDC7 Gene

Orthologs for FNDC7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FNDC7 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FNDC7 35
  • 89.22 (n)
  • 88.68 (a)
FNDC7 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FNDC7 35
  • 89.5 (n)
  • 90.04 (a)
FNDC7 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fndc7 35
  • 84.7 (n)
  • 85.66 (a)
Fndc7 16
Fndc7 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FNDC7 35
  • 98.86 (n)
  • 98.09 (a)
FNDC7 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fndc7 35
  • 84.47 (n)
  • 85.66 (a)
oppossum
(Monodelphis domestica)
Mammalia FNDC7 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FNDC7 36
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves FNDC7 36
  • 60 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FNDC7 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100492589 35
  • 62.23 (n)
  • 58.13 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100538169 35
  • 55.62 (n)
  • 47.29 (a)
fndc7 36
  • 47 (a)
OneToMany
FNDC7 (1 of 7) 36
  • 5 (a)
OneToMany
FNDC7 (3 of 7) 36
  • 44 (a)
OneToMany
FNDC7 (4 of 7) 36
  • 21 (a)
OneToMany
FNDC7 (5 of 7) 36
  • 27 (a)
OneToMany
FNDC7 (6 of 7) 36
  • 32 (a)
OneToMany
FNDC7 (7 of 7) 36
  • 24 (a)
OneToMany
Species with no ortholog for FNDC7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FNDC7 Gene

ENSEMBL:
Gene Tree for FNDC7 (if available)
TreeFam:
Gene Tree for FNDC7 (if available)

Paralogs for FNDC7 Gene

No data available for Paralogs for FNDC7 Gene

Variants for FNDC7 Gene

Sequence variations from dbSNP and Humsavar for FNDC7 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs914806 -- 108,717,559(-) GATTT(C/T)AAAGT intron-variant
rs914807 -- 108,717,412(-) CTCCA(A/G)TTGGG intron-variant
rs928477 -- 108,737,967(+) ctgaa(A/G)tatag intron-variant
rs928478 -- 108,738,188(+) TTAAC(A/G)GCCTG intron-variant
rs968632 -- 108,724,002(+) TATTA(A/G)TAAAA intron-variant

Relevant External Links for FNDC7 Gene

HapMap Linkage Disequilibrium report
FNDC7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FNDC7 Gene

Disorders for FNDC7 Gene

Relevant External Links for FNDC7

Genetic Association Database (GAD)
FNDC7

No disorders were found for FNDC7 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for FNDC7 Gene

Publications for FNDC7 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 48
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for FNDC7 Gene

Sources for FNDC7 Gene

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