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Aliases for FNDC1-IT1 Gene

Subcategory (RNA class) for FNDC1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FNDC1-IT1 Gene

  • FNDC1 Intronic Transcript 1 2 3 5
  • FNDC1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FNDC1-IT1 Gene

Previous GeneCards Identifiers for FNDC1-IT1 Gene

  • GC00U932977
  • GC06P159662

Summaries for FNDC1-IT1 Gene

GeneCards Summary for FNDC1-IT1 Gene

FNDC1-IT1 (FNDC1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FNDC1-IT1 Gene

Genomics for FNDC1-IT1 Gene

Regulatory Elements for FNDC1-IT1 Gene

Enhancers for FNDC1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F159252 0.9 ENCODE 0.4 +12.4 12400 1.1 PKNOX1 INSM2 ZNF76 KLF17 FEZF1 THRB ZNF2 RAD21 ZNF366 SCRT2 FNDC1 FNDC1-IT1 ENSG00000231178
GH06F159217 0.6 ENCODE 0.3 -23.1 -23083 0.2 CTCF FOXA3 MAX SMC3 MNT RAD21 MYC TEAD3 FNDC1-IT1 LOC101929122
GH06F159202 0.6 Ensembl ENCODE 0.3 -37.0 -37033 1.5 BHLHE40 FNDC1 LOC101929122 FNDC1-IT1
GH06F159170 0.8 ENCODE 0.2 -69.8 -69804 2.6 INSM2 ZNF2 ZEB1 GLIS2 ZNF391 EGR2 ZNF263 ZNF280D ZEB2 REST FNDC1 LOC101929122 FNDC1-IT1
GH06F159174 0.7 ENCODE 0.2 -66.3 -66333 0.2 CTCF RAD21 ZNF101 ZNF143 SMC3 ZNF654 ZNF511 BHLHE40 NRF1 TRIM22 MRPL18 LOC101929122 FNDC1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FNDC1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FNDC1-IT1 Gene

Chromosome:
6
Start:
159,240,786 bp from pter
End:
159,243,329 bp from pter
Size:
2,544 bases
Orientation:
Plus strand

Genomic View for FNDC1-IT1 Gene

Genes around FNDC1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FNDC1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FNDC1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for FNDC1-IT1 Gene

Proteins for FNDC1-IT1 Gene

Post-translational modifications for FNDC1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FNDC1-IT1 Gene

Domains & Families for FNDC1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FNDC1-IT1 Gene

Function for FNDC1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FNDC1-IT1 Gene

Localization for FNDC1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FNDC1-IT1 Gene

Pathways & Interactions for FNDC1-IT1 Gene

SuperPathways for FNDC1-IT1 Gene

No Data Available

Interacting Proteins for FNDC1-IT1 Gene

Gene Ontology (GO) - Biological Process for FNDC1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FNDC1-IT1 Gene

Transcripts for FNDC1-IT1 Gene

mRNA/cDNA for FNDC1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FNDC1-IT1 Gene

No ASD Table

Relevant External Links for FNDC1-IT1 Gene

GeneLoc Exon Structure for
FNDC1-IT1
ECgene alternative splicing isoforms for
FNDC1-IT1

Expression for FNDC1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FNDC1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FNDC1-IT1 Gene

This gene is overexpressed in Thyroid (x10.8), Nerve - Tibial (x8.0), and Pancreas (x5.9).
genes like me logo Genes that share expression patterns with FNDC1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FNDC1-IT1 Gene

Orthologs for FNDC1-IT1 Gene

Evolution for FNDC1-IT1 Gene

ENSEMBL:
Gene Tree for FNDC1-IT1 (if available)
TreeFam:
Gene Tree for FNDC1-IT1 (if available)

No data available for Orthologs for FNDC1-IT1 Gene

Paralogs for FNDC1-IT1 Gene

No data available for Paralogs for FNDC1-IT1 Gene

Variants for FNDC1-IT1 Gene

Relevant External Links for FNDC1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FNDC1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FNDC1-IT1 Gene

Disorders for FNDC1-IT1 Gene

No disorders were found for FNDC1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FNDC1-IT1 Gene

Publications for FNDC1-IT1 Gene

No publications were found for FNDC1-IT1 Gene.

Products for FNDC1-IT1 Gene

Sources for FNDC1-IT1 Gene

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