Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FMR1-IT1 Gene

Subcategory (RNA class) for FMR1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FMR1-IT1 Gene

  • FMR1 Intronic Transcript 1 2 3 5
  • FMR1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Fragile X Mental Retardation Syndrome Protein 3
  • FMR1 3

External Ids for FMR1-IT1 Gene

Previous GeneCards Identifiers for FMR1-IT1 Gene

  • GC00U933127
  • GC0XP147030

Summaries for FMR1-IT1 Gene

GeneCards Summary for FMR1-IT1 Gene

FMR1-IT1 (FMR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FMR1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FMR1-IT1 Gene

Genomics for FMR1-IT1 Gene

GeneHancer (GH) Regulatory Elements for FMR1-IT1 Gene

Promoters and enhancers for FMR1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI147908 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 23.7 -34.3 -34346 7.7 PKNOX1 CLOCK ATF1 FOXA2 SIN3A FEZF1 ZNF2 ETS1 ZNF121 GLIS2 ENSG00000274086 FMR1 FMR1-IT1 FMR1-AS1 GC0XM147914
GH0XI148609 Enhancer 0.9 Ensembl ENCODE 9.7 +663.2 663232 1.3 SMARCA5 ZNF140 JUNB EBF1 ELF1 DPF2 BATF ATF2 IKZF1 NBN LINC00893 IDS2 FMR1-IT1 AFF2-IT1 AFF2 RN7SKP267
GH0XI147950 Enhancer 0.9 UCNEbase 0.8 +3.6 3578 0.3 FOXA2 CEBPG ZBTB40 HOMEZ MIXL1 GATAD2A TEAD1 RXRA FOXA3 CEBPB FMR1-IT1 FMR1NB FMR1
GH0XI147981 Promoter 0.9 EPDnew 0.3 +34.4 34384 0.1 ATF1 L3MBTL2 ZBTB11 ZBTB40 ATF2 GABPA SP1 GABPB1 NR2C1 ATF7 FMR1NB FMR1-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FMR1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FMR1-IT1 Gene

Genomic Locations for FMR1-IT1 Gene
chrX:147,946,941-147,947,583
(GRCh38/hg38)
Size:
643 bases
Orientation:
Plus strand

Genomic View for FMR1-IT1 Gene

Genes around FMR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FMR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FMR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for FMR1-IT1 Gene

Proteins for FMR1-IT1 Gene

Post-translational modifications for FMR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FMR1-IT1 Gene

Domains & Families for FMR1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FMR1-IT1 Gene

Function for FMR1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FMR1-IT1 Gene

Localization for FMR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FMR1-IT1 Gene

Pathways & Interactions for FMR1-IT1 Gene

SuperPathways for FMR1-IT1 Gene

No Data Available

Interacting Proteins for FMR1-IT1 Gene

Gene Ontology (GO) - Biological Process for FMR1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FMR1-IT1 Gene

Drugs & Compounds for FMR1-IT1 Gene

No Compound Related Data Available

Transcripts for FMR1-IT1 Gene

mRNA/cDNA for FMR1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FMR1-IT1 Gene

No ASD Table

Relevant External Links for FMR1-IT1 Gene

GeneLoc Exon Structure for
FMR1-IT1
ECgene alternative splicing isoforms for
FMR1-IT1

Expression for FMR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FMR1-IT1 Gene

genes like me logo Genes that share expression patterns with FMR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FMR1-IT1 Gene

Orthologs for FMR1-IT1 Gene

Evolution for FMR1-IT1 Gene

ENSEMBL:
Gene Tree for FMR1-IT1 (if available)
TreeFam:
Gene Tree for FMR1-IT1 (if available)

No data available for Orthologs for FMR1-IT1 Gene

Paralogs for FMR1-IT1 Gene

No data available for Paralogs for FMR1-IT1 Gene

Variants for FMR1-IT1 Gene

Additional Variant Information for FMR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FMR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FMR1-IT1 Gene

Disorders for FMR1-IT1 Gene

No disorders were found for FMR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FMR1-IT1 Gene

Publications for FMR1-IT1 Gene

No publications were found for FMR1-IT1 Gene.

Products for FMR1-IT1 Gene

Sources for FMR1-IT1 Gene

Content
Loading form....