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Aliases for FMR1-AS1 Gene

Subcategory (RNA class) for FMR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for FMR1-AS1 Gene

  • FMR1 Antisense RNA 1 2 3 5
  • FMR1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Antisense Fragile X Mental Retardation Protein Variant A 3
  • Antisense Fragile X Mental Retardation Protein 2
  • FMR1 Antisense RNA (Non-Protein Coding) 2
  • FMR1-AS 3
  • ASFMR1 3
  • FMR1AS 3
  • FMR4 3

External Ids for FMR1-AS1 Gene

Previous HGNC Symbols for FMR1-AS1 Gene

  • FMR1AS
  • FMR1-AS

Previous GeneCards Identifiers for FMR1-AS1 Gene

  • GC0XM146993

Summaries for FMR1-AS1 Gene

GeneCards Summary for FMR1-AS1 Gene

FMR1-AS1 (FMR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with FMR1-AS1 include Fragile X Syndrome.

Gene Wiki entry for FMR1-AS1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FMR1-AS1 Gene

Genomics for FMR1-AS1 Gene

Regulatory Elements for FMR1-AS1 Gene

Enhancers for FMR1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF147916 0.9 Ensembl ENCODE 0.8 +4.2 4158 2.8 SCRT1 PKNOX1 JUNB ZBTB40 GABPA ZNF366 SCRT2 ZNF512 PBX2 ETV6 ENSG00000227083 FMR1-AS1 FMR1
GH0XF147908 1 ENCODE 0.4 +9.6 9564 7.7 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 ELK1 KLF7 SP3 REST FMR1-IT1 FMR1 FMR1-AS1
GH0XF147926 0.2 ENCODE 0.4 -5.7 -5691 2.1 GC0XM147914 FMR1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FMR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FMR1-AS1 Gene

147,909,431 bp from pter
147,922,158 bp from pter
12,728 bases
Minus strand

Genomic View for FMR1-AS1 Gene

Genes around FMR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FMR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FMR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FMR1-AS1 Gene

Proteins for FMR1-AS1 Gene

Post-translational modifications for FMR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FMR1-AS1 Gene

Domains & Families for FMR1-AS1 Gene

Gene Families for FMR1-AS1 Gene

Suggested Antigen Peptide Sequences for FMR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FMR1-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for FMR1-AS1 Gene

Function for FMR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FMR1-AS1 Gene

Localization for FMR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FMR1-AS1 Gene

Pathways & Interactions for FMR1-AS1 Gene

SuperPathways for FMR1-AS1 Gene

No Data Available

Interacting Proteins for FMR1-AS1 Gene

Gene Ontology (GO) - Biological Process for FMR1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for FMR1-AS1 Gene

Transcripts for FMR1-AS1 Gene

mRNA/cDNA for FMR1-AS1 Gene

(11) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FMR1-AS1 Gene

FMR1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FMR1-AS1 Gene

No ASD Table

Relevant External Links for FMR1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FMR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FMR1-AS1 Gene

SOURCE GeneReport for Unigene cluster for FMR1-AS1 Gene:

genes like me logo Genes that share expression patterns with FMR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FMR1-AS1 Gene

Orthologs for FMR1-AS1 Gene

Evolution for FMR1-AS1 Gene

Gene Tree for FMR1-AS1 (if available)
Gene Tree for FMR1-AS1 (if available)

No data available for Orthologs for FMR1-AS1 Gene

Paralogs for FMR1-AS1 Gene

No data available for Paralogs for FMR1-AS1 Gene

Variants for FMR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FMR1-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs10521868 -- 147,909,986(+) GATCT(A/C)TATCG nc-transcript-variant, upstream-variant-2KB
rs111485627 -- 147,912,197(+) GTGGT(C/G/T)GAAGT nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs112241668 -- 147,911,286(+) ATTTT(G/T)AGATC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113111897 -- 147,911,090(+) CCTGT(A/G)GACAG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113237999 -- 147,911,275(+) GAAAG(C/G)CTCAC intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FMR1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2506e212 CNV loss 25503493
esv3574912 CNV loss 25503493
nsv7141 CNV deletion 18451855

Relevant External Links for FMR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FMR1-AS1 Gene

Disorders for FMR1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FMR1-AS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
fragile x syndrome
  • fragile x mental retardation syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for FMR1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with FMR1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FMR1-AS1 Gene

Publications for FMR1-AS1 Gene

  1. A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome. (PMID: 18213394) Khalil A.M. … Wahlestedt C. (PLoS ONE 2008) 2 3 64
  2. An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals. (PMID: 17921506) Ladd P.D. … Filippova G.N. (Hum. Mol. Genet. 2007) 2 3 64
  3. Comprehensive analysis of the transcriptional landscape of the human FMR1 gene reveals two new long noncoding RNAs differentially expressed in Fragile X syndrome and Fragile X-associated tremor/ataxia syndrome. (PMID: 24005575) Pastori C. … Wahlestedt C. (Hum. Genet. 2014) 3 64
  4. Xq27 FRAXA locus is a strong candidate for dyslexia: evidence from a genome-wide scan in French families. (PMID: 23307483) Huc-Chabrolle M. … Bonnet-Brilhault F. (Behav. Genet. 2013) 3 64
  5. Role of CTCF protein in regulating FMR1 locus transcription. (PMID: 23874213) Lanni S. … Neri G. (PLoS Genet. 2013) 3 64

Products for FMR1-AS1 Gene

Sources for FMR1-AS1 Gene

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