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FMO9P Gene(Pseudogene)

Flavin Containing Monooxygenase 9 Pseudogene

GCID:
GC01P166572
GIFtS:
26
Genes Participants
UDN Logo

Aliases for FMO9P Gene

Aliases for FMO9P Gene

  • Flavin Containing Monooxygenase 9 Pseudogene 2 3 5
  • RP11-45J16.2 3

External Ids for FMO9P Gene

Previous GeneCards Identifiers for FMO9P Gene

  • GC00U921653
  • GC01P164840
  • GC01P137820

Summaries for FMO9P Gene

GeneCards Summary for FMO9P Gene

FMO9P (Flavin Containing Monooxygenase 9 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FMO9P Gene

Genomics for FMO9P Gene

Products:

  1. Regulatory Element

Regulatory Elements for FMO9P Gene

Enhancers for FMO9P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G166585 1 ENCODE 7 -18.6 -18602 0.6 PKNOX1 ATF1 ARNT TCF12 ZNF766 ELK1 GATA2 NCOA1 SMARCB1 MEF2D DUTP6 FMO9P FMO8P
GH01G167111 0.7 dbSUPER 4.3 +508.8 508845 2.5 ELF3 RNF2 SAP30 MNT MIER2 ZNF644 PPARG TEAD3 RARA FOS GPA33 LINC01363 DUSP27 FMO9P GC01P167158
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FMO9P on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the FMO9P gene promoter:

Genomic Location for FMO9P Gene

Chromosome:
1
Start:
166,603,916 bp from pter
End:
166,631,400 bp from pter
Size:
27,485 bases
Orientation:
Plus strand

Genomic View for FMO9P Gene

Genes around FMO9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FMO9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FMO9P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FMO9P Gene

Proteins for FMO9P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FMO9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for FMO9P Gene

Domains & Families for FMO9P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FMO9P Gene

Function for FMO9P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes for FMO9P Gene

GenomeRNAi human phenotypes for FMO9P:
genes like me logo Genes that share phenotypes with FMO9P: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FMO9P Gene

Localization for FMO9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FMO9P Gene

Pathways & Interactions for FMO9P Gene

SuperPathways for FMO9P Gene

PathCards logo More details on SuperPathways for FMO9P
No Data Available

Interacting Proteins for FMO9P Gene

Gene Ontology (GO) - Biological Process for FMO9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FMO9P Gene

Drugs & Compounds for FMO9P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FMO9P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for FMO9P Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FMO9P Gene

Flavin containing monooxygenase 9 pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FMO9P Gene

No ASD Table

Relevant External Links for FMO9P Gene

GeneLoc Exon Structure for
FMO9P
ECgene alternative splicing isoforms for
FMO9P

Expression for FMO9P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FMO9P Gene

mRNA expression in normal human tissues for FMO9P Gene
mRNA expression by GTEx for FMO9P Gene

mRNA differential expression in normal tissues according to GTEx for FMO9P Gene

This gene is overexpressed in Bladder (x24.6), Esophagus - Mucosa (x12.4), and Minor Salivary Gland (x11.4).

NURSA nuclear receptor signaling pathways regulating expression of FMO9P Gene:

FMO9P

SOURCE GeneReport for Unigene cluster for FMO9P Gene:

Hs.348539
genes like me logo Genes that share expression patterns with FMO9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FMO9P Gene

Orthologs for FMO9P Gene

Evolution for FMO9P Gene

ENSEMBL:
Gene Tree for FMO9P (if available)
TreeFam:
Gene Tree for FMO9P (if available)

No data available for Orthologs for FMO9P Gene

Paralogs for FMO9P Gene

No data available for Paralogs for FMO9P Gene

Variants for FMO9P Gene

Sequence variations from dbSNP and Humsavar for FMO9P Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000054881 -- 166,623,485(+) TGTGA(A/G)ATATA intron-variant
rs1000151409 -- 166,622,562(+) CAAAA(C/T)AAAAC intron-variant
rs1000196192 -- 166,618,657(+) TGAAG(C/T)CGGGG intron-variant
rs1000481188 -- 166,622,214(+) CATTT(G/T)TTTAT intron-variant
rs1000495214 -- 166,606,396(+) CATCA(C/T)GGCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FMO9P Gene

Variant ID Type Subtype PubMed ID
esv2674242 CNV deletion 23128226
esv2758975 CNV loss 17122850
esv34401 CNV loss 17911159
esv3578237 CNV loss 25503493
esv3587830 CNV loss 21293372
esv3587833 CNV loss 21293372
esv3587834 CNV loss 21293372
esv3890737 CNV loss 25118596

Relevant External Links for FMO9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FMO9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FMO9P Gene

Disorders for FMO9P Gene

Relevant External Links for FMO9P

Genetic Association Database (GAD)
FMO9P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FMO9P

No disorders were found for FMO9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FMO9P Gene

Publications for FMO9P Gene

  1. Organization and evolution of the flavin-containing monooxygenase genes of human and mouse: identification of novel gene and pseudogene clusters. (PMID: 15077013) Hernandez D. … Shephard E.A. (Pharmacogenetics 2004) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FMO9P Gene

Sources for FMO9P Gene

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