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Flavin Containing Monooxygenase 9 Pseudogene
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Aliases
for FMO9P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
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| Aliases |
|---|
| Flavin Containing Monooxygenase 9 Pseudogene1 2 |
Export aliases for FMO9P gene to outside databasesPrevious GC identifers: GC00U921653 GC01P164840 GC01P137820 |
Summaries
for FMO9P gene(According to Entrez Gene,
GeneCards,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
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GeneCards Summary for FMO9P Gene:
FMO9P (flavin containing monooxygenase 9 pseudogene) is a pseudogene.
|
Genomic Views
for FMO9P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 75),
Regulatory elements and Epigenetics data according to
QIAGEN, and/or
SwitchGear Genomics)
About This Section
TryGeneCards Plus | RefSeq DNA sequence:- NC_000001.11 NC_018912.2 NT_004487.20
Regulatory elements:
 Regulatory transcription factor binding sites in the FMO9P gene promoter:
TBP LHX3b/Lhx3b E47 Arnt PPAR-gamma1 S8 FAC1 LHX3a/Lhx3a Cart-1 PPAR-gamma2
Other transcription factors
Search Chromatin IP Primers for FMO9P
Epigenetics:
| | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FMO9P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q24.1 Ensembl cytogenetic band: 1q24.1 HGNC cytogenetic band: 1q24.1FMO9P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P166572: view genomic region
(about GC identifiers)
Start:
|
166,572,912 bp from pter |
End:
|
166,600,637 bp from pter |
Size:
|
27,726 bases |
Orientation:
|
plus strand |
|
Proteins
for FMO9P gene
(According to
1UniProtKB,
HORDE,
2neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Antibodies by
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
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UniProtKB: --
|
Domains /
Families
for FMO9P gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
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Function
for FMO9P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
genOway,
transcription factor targeting from QIAGEN
and/or HOMER,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
SwitchGear Genomics,
Gene Editing from DNA2.0,
Clones from OriGene,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
ESI BIO,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Animal Models:
Inhib. RNA
Products: |  | OriGene RNAi products in human, mouse, rat for FMO9P
| | | Predesigned siRNA for gene silencing in human, mouse, rat FMO9P |
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for FMO9P | |  | Browse ESI BIO Cell Lines and PureStem Progenitors for FMO9P  | In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FMO9P |
Localization
for FMO9P gene
(According to UniProtKB, COMPARTMENTS Subcellular localization database,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Subcellular locations from COMPARTMENTS:
| Compartment | Confidence |
|---|
|
| cytosol | 2 | | endoplasmic reticulum | 1 | | extracellular | 1 | | mitochondrion | 1 | | nucleus | 1 | | peroxisome | 1 |
|
Pathways & Interactions
for FMO9P gene
(SuperPaths according to PathCards,
Pathways according to
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
QIAGEN,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene).
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Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FMO9P
Interactions:
Search GeneGlobe Interaction Network for FMO9P
|
Drugs & Compounds
for FMO9P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience,
ApexBio,
HMDB,
BitterDB, and/or
Novoseek,
Ligands according to IUPHAR,
and Drugs according to DrugBank,
Enzo Life Sciences, and/or
PharmGKB)
About This Section
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 Browse compounds at ApexBio
 Browse Tocris compounds for FMO9P
|
Transcripts
for FMO9P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
SwitchGear Genomics,
Tagged/untagged cDNA clones from
OriGene,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene, and/or
QIAGEN
)
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REFSEQ mRNAs for FMO9P gene: NM_138784.1 Unigene Cluster for FMO9P: Flavin containing monooxygenase 9 pseudogene Hs.348539 [show with all ESTs]Unigene Representative Sequence: BC0143412 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000477875(uc010pld.2) ENST00000488458
Inhib. RNA
Products: | | OriGene RNAi products in human, mouse, rat for FMO9P
| |
| | Predesigned siRNA for gene silencing in human, mouse, rat FMO9P |
Primer
Products: | | OriGene qSTAR qPCR primer pairs in human, mouse for FMO9P
| | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat FMO9P | | | QuantiTect SYBR Green Assays in human, mouse, rat FMO9P | | | QuantiFast Probe-based Assays in human, mouse, rat FMO9P |
Additional mRNA sequence: BC014341.1 NR_002925.2 1 DOTS entry: DT.92042066 5 AceView cDNA sequences: BC014341 BX283830 BF028231 NM_138784 BE566078
GeneLoc Exon Structure
|
Expression
for FMO9P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MaxQB,
plus additional links to
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
QIAGEN,
Primers from
OriGene, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
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FMO9P expression in normal human tissues
(normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCGACCACTG
About this image FMO9P Protein expression data from MOPED1, PaxDb2 and
MaxQB3:  About this image
SOURCE GeneReport for Unigene cluster: Hs.348539
Custom PCR Arrays for FMO9P
Primer
Products: | | OriGene qSTAR qPCR primer pairs in human, mouse for FMO9P
| | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat FMO9P | | | QuantiTect SYBR Green Assays in human, mouse, rat FMO9P | | | QuantiFast Probe-based Assays in human, mouse, rat FMO9P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FMO9P |
Orthologs
for FMO9P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
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This gene was present in the common ancestor of human and mouse.
Orthologs for FMO9P gene from 1 species (see representative species ) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Fmo95 |
flavin containing monooxygenase 9 |
-- |
|
1 (74.03 cM) 166662055 |
ENSEMBL Gene Tree for FMO9P (if available)
TreeFam Gene Tree for FMO9P (if available) |
Paralogs
for FMO9P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Genomic Variants
for FMO9P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD), the Human Cytochrome P450 Allele
Nomenclature Database, and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for FMO9P (166572912 - 166600637 bp)
Structural Variations
Database of Genomic Variants (DGV) 10 variations for FMO9P: About this table
| | Site Specific Mutation Identification with PCR Assays |
| | SeqTarget long-range PCR primers for resequencing FMO9P |
|
Disorders
/ Diseases
for FMO9P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
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FMO9P for disorders About GeneDecksing
Genetic Association Database (GAD): FMO9P
Export disorders for FMO9P gene to outside databases
|
Publications
for FMO9P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
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PubMed articles for FMO9P gene integrated from 10 sources:
(articles sorted by number of sources associating them with FMO9P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Organization and evolution of the flavin-containing monooxygenase genes of human and mouse: identification of novel gene and pseudogene clusters. (PubMed id 15077013)1, 3 Hernandez D....Shephard E.A. (Pharmacogenetics 2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
|
External Searches for FMO9P gene (in PubMed,
OMIM, and NCBI Bookshelf)
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|
Genome Databases showing FMO9P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
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|
Other Databases showing FMO9P gene
(According to HUGE)
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Specialized Databases showing FMO9P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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| Name | Description |
| PharmGKB entry for FMO9P | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
TryGeneCards Plus | Patent Information for FMO9P gene:
Search GeneIP for patents involving FMO9P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FMO9P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or
ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory,
genOway)
About This Section
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 | |
 |
| | | | |
 |
 |
|  | Block miRNA regulation of human, mouse, rat FMO9P using miScript Target Protectors | | SeqTarget long-range PCR primers for resequencing FMO9P | | | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FMO9P | | Predesigned siRNA for gene silencing in human, mouse, rat FMO9P | | | QuantiFast Probe-based Assays in human, mouse, rat FMO9P | | QuantiTect SYBR Green Assays in human, mouse, rat FMO9P | | | Custom PCR Arrays for FMO9P | | Search Chromatin IP Primers for FMO9P | | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat FMO9P | | Search GeneGlobe Interaction Network for FMO9P | | | Regulatory tfbs in FMO9P promoter |
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 |  |  |  | |
| | | Search Tocris compounds for FMO9P |
| | |  |  |  |
 | | | | |
 |
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 |  | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FMO9P |
| |  |  |  |  | | | Search ThermoFisher Antibodies for FMO9P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FMO9P |
| | |  |  | | |
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