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Aliases for FLVCR1-AS1 Gene

Subcategory (RNA class) for FLVCR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FLVCR1-AS1 Gene

  • FLVCR1 Antisense RNA 1 (Head To Head) 2 3 5
  • FLVCR1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • FLVCR1 Antisense RNA 1 2 4
  • LQK1 3 4
  • Non-Protein Coding RNA 292 2
  • NCRNA00292 3

External Ids for FLVCR1-AS1 Gene

Previous HGNC Symbols for FLVCR1-AS1 Gene

  • NCRNA00292

Previous GeneCards Identifiers for FLVCR1-AS1 Gene

  • GC01M213030

Summaries for FLVCR1-AS1 Gene

GeneCards Summary for FLVCR1-AS1 Gene

FLVCR1-AS1 (FLVCR1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLVCR1-AS1 Gene

Genomics for FLVCR1-AS1 Gene

Regulatory Elements for FLVCR1-AS1 Gene

Enhancers for FLVCR1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G212915 1.7 FANTOM5 Ensembl ENCODE dbSUPER 66.2 -57.8 -57834 2.8 NFIB ARID4B RAD21 EGR1 EGR2 ZNF654 CEBPB REST NFIC KLF16 FLVCR1-AS1 FLVCR1 TATDN3 SPATA45 VASH2 ENSG00000282718 GC01M212767
GH01G212856 1.2 ENCODE 81.4 -0.9 -881 4.5 CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC FLVCR1-AS1 TATDN3 SPATA45 FLVCR1 GC01M212767
GH01G212906 1.1 FANTOM5 ENCODE dbSUPER 41.9 -50.6 -50580 4.2 CHD1 SUPT20H ZKSCAN1 NFIC POLR2A ZNF350 ZNF584 ZBTB33 PRDM1 FLVCR1-AS1 TATDN3 FLVCR1 SPATA45 ENSG00000282718 GC01M212767
GH01G212789 1.2 ENCODE 33.8 +66.5 66542 4.4 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 FLVCR1-AS1 ANGEL2 FLVCR1 TATDN3 ENSG00000235182 RPS28P2 VASH2 BATF3 NSL1 PIR52879
GH01G212819 1.2 FANTOM5 Ensembl ENCODE 33.7 +38.4 38373 1.1 PKNOX1 TBL1XR1 MTA2 NR2F1 RELA PRDM6 IKZF1 TCF7 RELB CREM FLVCR1-AS1 ENSG00000235182 FLVCR1 RPS28P2 TATDN3 VASH2 BATF3 RPS5P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLVCR1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FLVCR1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000256589 -562 2601 HDGF HNRNPUL1 PKNOX1 CREB3L1 ARNT AGO1 ZFP64 WRNIP1 ARID4B SIN3A

Genomic Location for FLVCR1-AS1 Gene

Chromosome:
1
Start:
212,852,108 bp from pter
End:
212,858,138 bp from pter
Size:
6,031 bases
Orientation:
Minus strand

Genomic View for FLVCR1-AS1 Gene

Genes around FLVCR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLVCR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLVCR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLVCR1-AS1 Gene

Proteins for FLVCR1-AS1 Gene

  • Protein details for FLVCR1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAF5-LQK1_HUMAN
    Recommended name:
    Putative uncharacterized protein LQK1
    Protein Accession:
    Q8TAF5

    Protein attributes for FLVCR1-AS1 Gene

    Size:
    88 amino acids
    Molecular mass:
    10021 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FLVCR1-AS1 Gene

Post-translational modifications for FLVCR1-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FLVCR1-AS1 Gene

Domains & Families for FLVCR1-AS1 Gene

Protein Domains for FLVCR1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FLVCR1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLVCR1-AS1 Gene

Function for FLVCR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLVCR1-AS1 Gene

Localization for FLVCR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLVCR1-AS1 Gene

Pathways & Interactions for FLVCR1-AS1 Gene

SuperPathways for FLVCR1-AS1 Gene

No Data Available

Interacting Proteins for FLVCR1-AS1 Gene

Gene Ontology (GO) - Biological Process for FLVCR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLVCR1-AS1 Gene

Drugs & Compounds for FLVCR1-AS1 Gene

No Compound Related Data Available

Transcripts for FLVCR1-AS1 Gene

mRNA/cDNA for FLVCR1-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLVCR1-AS1 Gene

FLVCR1 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLVCR1-AS1 Gene

No ASD Table

Relevant External Links for FLVCR1-AS1 Gene

GeneLoc Exon Structure for
FLVCR1-AS1
ECgene alternative splicing isoforms for
FLVCR1-AS1

Expression for FLVCR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLVCR1-AS1 Gene

SOURCE GeneReport for Unigene cluster for FLVCR1-AS1 Gene:

Hs.552649

mRNA Expression by UniProt/SwissProt for FLVCR1-AS1 Gene:

Q8TAF5-LQK1_HUMAN
Tissue specificity: Expressed in a wide variety of tissues.
genes like me logo Genes that share expression patterns with FLVCR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLVCR1-AS1 Gene

Orthologs for FLVCR1-AS1 Gene

Evolution for FLVCR1-AS1 Gene

ENSEMBL:
Gene Tree for FLVCR1-AS1 (if available)
TreeFam:
Gene Tree for FLVCR1-AS1 (if available)

No data available for Orthologs for FLVCR1-AS1 Gene

Paralogs for FLVCR1-AS1 Gene

No data available for Paralogs for FLVCR1-AS1 Gene

Variants for FLVCR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FLVCR1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs267606819 Pathogenic 212,859,173(+) CCACC(A/G)CCGTG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs267606820 Pathogenic 212,858,813(+) TGGTC(A/G)ACGCC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs267606821 Pathogenic 212,859,026(+) TCAAG(C/T)GCGGC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs373452417 Uncertain significance 212,858,297(+) CGCGG(-/T)AGCGC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs41296692 Uncertain significance 212,858,366(+) GTGGG(A/G)CCCCA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for FLVCR1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv571n100 CNV gain 25217958
dgv572n100 CNV gain 25217958
esv3891115 CNV loss 25118596
nsv1008383 CNV gain 25217958

Relevant External Links for FLVCR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FLVCR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FLVCR1-AS1 Gene

Disorders for FLVCR1-AS1 Gene

Relevant External Links for FLVCR1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLVCR1-AS1

No disorders were found for FLVCR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLVCR1-AS1 Gene

Publications for FLVCR1-AS1 Gene

  1. Genomic structure and evolutionary context of the human feline leukemia virus subgroup C receptor (hFLVCR) gene: evidence for block duplications and de novo gene formation within duplicons of the hFLVCR locus. (PMID: 11943475) Lipovich L. … Quigley J.G. (Gene 2002) 2 3 4 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FLVCR1-AS1 Gene

Sources for FLVCR1-AS1 Gene

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