Aliases for FLRT1 Gene
Aliases for FLRT1 Gene
External Ids for FLRT1 Gene
- HGNC: 3760
- Entrez Gene: 23769
- Ensembl: ENSG00000126500
- OMIM: 604806
- UniProtKB: Q9NZU1
Previous GeneCards Identifiers for FLRT1 Gene
- GC11M066466
- GC11M065550
- GC11P064122
- GC11P063646
- GC11P063627
- GC11P063871
- GC11P060200
Summaries for FLRT1 Gene
-
This gene encodes a member of the fibronectin leucine rich transmembrane protein (FLRT) family. The family members may function in cell adhesion and/or receptor signalling. Their protein structures resemble small leucine-rich proteoglycans found in the extracellular matrix. The encoded protein shares sequence similarity with two other family members, FLRT2 and FLRT3. This gene is expressed in kidney and brain. [provided by RefSeq, Jul 2008]
GeneCards Summary for FLRT1 Gene
FLRT1 (Fibronectin Leucine Rich Transmembrane Protein 1) is a Protein Coding gene. Diseases associated with FLRT1 include Autosomal Recessive Spastic Paraplegia Type 68. Among its related pathways are Signaling by FGFR2 and Signaling by GPCR. Gene Ontology (GO) annotations related to this gene include protein binding, bridging and signal transducer activity, downstream of receptor. An important paralog of this gene is FLRT3.
UniProtKB/Swiss-Prot for FLRT1 Gene
-
Plays a role in fibroblast growth factor-mediated signaling cascades that lead to the activation of MAP kinases. Promotes neurite outgrowth via FGFR1-mediated activation of downstream MAP kinases. Promotes an increase both in neurite number and in neurite length. May play a role in cell-cell adhesion and cell guidance via its interaction with ADGRL1/LPHN1 and ADGRL3.
Additional gene information for FLRT1 Gene
- Monarch Initiative
- Search for FLRT1 at DataMed
- Search for FLRT1 at HumanCyc
No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLRT1 Gene
Genomics for FLRT1 Gene
GeneHancer (GH) Regulatory Elements for FLRT1 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH11I064036 | Promoter/Enhancer | 1.4 | Ensembl ENCODE dbSUPER | 550.8 | +0.6 | 585 | 1.1 | CTCF MXI1 MAX ZIC2 FOXM1 GLIS2 PATZ1 PRDM10 EZH2 MAZ | ENSG00000256824 FLRT1 VEGFB PIR44183 MACROD1 | |
GH11I064034 | Enhancer | 0.7 | dbSUPER | 550.8 | -1.1 | -1077 | 1.7 | CTCF SIN3A HIC1 ZNF335 ZFHX2 GLIS2 ZNF366 PATZ1 ZNF143 CHD2 | FLRT1 ENSG00000256824 PIR58012 MACROD1 | |
GH11I064103 | Promoter/Enhancer | 0.7 | EPDnew dbSUPER | 550.2 | +67.3 | 67275 | 0.1 | FLRT1 PIR46997 ENSG00000256481 MACROD1 ENSG00000256824 | ||
GH11I064037 | Enhancer | 0.4 | dbSUPER | 550.8 | +2.0 | 1970 | 0.5 | SUZ12 EZH2 | ENSG00000256824 FLRT1 MACROD1 PIR44183 | |
GH11I064237 | Promoter/Enhancer | 2.3 | EPDnew Ensembl ENCODE dbSUPER | 5.1 | +209.3 | 209349 | 16.6 | CLOCK MLX FEZF1 DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC | PPP1R14B FKBP2 LOC105369340 PLCB3 TRPT1 LOC102723878 VEGFB TRMT112 FERMT3 GPR137 |
- Top Transcription factor binding sites by QIAGEN in the FLRT1 gene promoter:
Regulatory Element Products
Genomic Locations for FLRT1 Gene
- chr11:64,035,970-64,119,183
- (GRCh38/hg38)
- Size:
- 83,214 bases
- Orientation:
- Plus strand
- chr11:63,870,660-63,886,645
- (GRCh37/hg19)
Genomic View for FLRT1 Gene
- Cytogenetic band:
-
- 11q13.1 by Ensembl
- 11q13.1 by Entrez Gene
- 11q13.1 by HGNC


RefSeq DNA sequence for FLRT1 Gene
Proteins for FLRT1 Gene
-
Protein details for FLRT1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9NZU1-FLRT1_HUMAN
- Recommended name:
- Leucine-rich repeat transmembrane protein FLRT1
- Protein Accession:
- Q9NZU1
- Q8WVA2
Protein attributes for FLRT1 Gene
- Size:
- 646 amino acids
- Molecular mass:
- 71358 Da
- Quaternary structure:
-
- Interacts with FGFR1. Interacts (via extracellular domain) with ADGRL1/LPHN1 and ADGRL3 (via olfactomedin-like domain).
- SequenceCaution:
-
- Sequence=AAF28459.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH18370.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAQ88675.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAF82620.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=EAW74194.1; Type=Erroneous initiation; Evidence={ECO:0000305};
Protein Expression for FLRT1 Gene
Post-translational modifications for FLRT1 Gene
- N-glycosylated.
- Phosphorylated in response to FGFR1 signaling, but is not a direct substrate of FGFR1 or SRC. A mutant where the Tyr phosphorylation sites have been replaced by Phe displays constitutive FGFR1-dependent activation of downstream MAP kinases.
- Proteolytic cleavage in the juxtamembrane region gives rise to a soluble ectodomain.
- Glycosylation at posLast=221221 and posLast=277277
Other Protein References for FLRT1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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No data available for DME Specific Peptides for FLRT1 Gene
Domains & Families for FLRT1 Gene
Gene Families for FLRT1 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted membrane proteins
Protein Domains for FLRT1 Gene
Suggested Antigen Peptide Sequences for FLRT1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for FLRT1 Gene
Function for FLRT1 Gene
Molecular function for FLRT1 Gene
- GENATLAS Biochemistry:
- fibronectin,leucine rich transmembrane protein1,extracellular matrix protein,expressed in kidney and brain
- UniProtKB/Swiss-Prot Function:
- Plays a role in fibroblast growth factor-mediated signaling cascades that lead to the activation of MAP kinases. Promotes neurite outgrowth via FGFR1-mediated activation of downstream MAP kinases. Promotes an increase both in neurite number and in neurite length. May play a role in cell-cell adhesion and cell guidance via its interaction with ADGRL1/LPHN1 and ADGRL3.
Phenotypes From GWAS Catalog for FLRT1 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0004860 | protein kinase inhibitor activity | IBA | -- |
GO:0005057 | signal transducer activity, downstream of receptor | NAS | 10644439 |
GO:0005104 | fibroblast growth factor receptor binding | IEA | -- |
GO:0030674 | protein binding, bridging | NAS | 10644439 |
Phenotypes for FLRT1 Gene
- MGI mutant phenotypes for FLRT1:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for FLRT1:
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-
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miRNA for FLRT1 Gene
- miRTarBase miRNAs that target FLRT1
-
- mmu-mir-149-5p (MIRT014543)
- mmu-mir-675-3p (MIRT583505)
- mmu-mir-466l-5p (MIRT583506)
- mmu-mir-466d-5p (MIRT583507)
- mmu-mir-466k (MIRT583508)
- mmu-mir-466i-5p (MIRT583509)
- mmu-mir-3073a-3p (MIRT590020)
- mmu-mir-466p-5p (MIRT591347)
- mmu-mir-466a-5p (MIRT591348)
- mmu-mir-466e-5p (MIRT591349)
- mmu-mir-1187 (MIRT591350)
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- Overview of 104 available FLRT1 gene related products
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-
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- Mammalian expression: PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
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-
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FLRT1 Gene
Localization for FLRT1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for FLRT1 Gene
- Cell membrane; Single-pass membrane protein. Endoplasmic reticulum membrane. Cytoplasmic vesicle membrane. Cytoplasm, perinuclear region. Cell junction, focal adhesion. Secreted. Cell projection. Cell junction. Note=In addition to its location at the cell membrane, colocalizes with FGFR1 in punctate perinuclear cytoplasmic vesicles. Detected along neurites and at contacts between neurite termini and other cells. Proteolytic cleavage gives rise to a shedded ectodomain. {ECO:0000250 UniProtKB:Q6RKD8}.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005576 | extracellular region | IEA | -- |
GO:0005578 | proteinaceous extracellular matrix | NAS | 10644439 |
GO:0005615 | extracellular space | IEA | -- |
GO:0005737 | cytoplasm | IBA | -- |
GO:0005783 | endoplasmic reticulum | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for FLRT1 Gene
Pathways & Interactions for FLRT1 Gene
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | Downstream signaling of activated FGFR2 | ||
2 | Signaling by GPCR | ||
3 | Signaling by FGFR2 | ||
4 | Negative regulation of FGFR3 signaling |
Pathways by source for FLRT1 Gene
4 Reactome pathways for FLRT1 Gene
Interacting Proteins for FLRT1 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006469 | negative regulation of protein kinase activity | IBA | -- |
GO:0007155 | cell adhesion | IEA | -- |
GO:0007275 | multicellular organism development | IEA | -- |
GO:0008543 | fibroblast growth factor receptor signaling pathway | IEA,TAS | -- |
GO:0016358 | dendrite development | IEA,ISS | -- |
No data available for SIGNOR curated interactions for FLRT1 Gene
Transcripts for FLRT1 Gene
mRNA/cDNA for FLRT1 Gene
- (3) REFSEQ mRNAs :
- (5) Additional mRNA sequences :
- (37) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FLRT1 Gene
CRISPR Products
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Vectors and viruses for KO, Activation, Repression, and more
-
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miRNA Products
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Clone Products
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for FLRT1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
- R&D Systems cDNA Clones for FLRT1
Expression for FLRT1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Brain (Nervous System)
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for FLRT1 Gene
NURSA nuclear receptor signaling pathways regulating expression of FLRT1 Gene:
FLRT1SOURCE GeneReport for Unigene cluster for FLRT1 Gene:
Hs.584876mRNA Expression by UniProt/SwissProt for FLRT1 Gene:
Q9NZU1-FLRT1_HUMANEvidence on tissue expression from TISSUES for FLRT1 Gene
- Nervous system(4.4)
Primer Products
-
OriGene qPCR primer pairs for FLRT1
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OriGene qPCR primer pairs and template standards for FLRT1
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No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLRT1 Gene
Orthologs for FLRT1 Gene
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | FLRT1 33 34 |
|
||
cow (Bos Taurus) |
Mammalia | FLRT1 33 34 |
|
||
dog (Canis familiaris) |
Mammalia | FLRT1 33 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Flrt1 33 |
|
||
mouse (Mus musculus) |
Mammalia | Flrt1 33 16 34 |
|
||
platypus (Ornithorhynchus anatinus) |
Mammalia | FLRT1 34 |
|
OneToOne | |
oppossum (Monodelphis domestica) |
Mammalia | -- 34 |
|
ManyToMany | |
chicken (Gallus gallus) |
Aves | -- 34 |
|
ManyToMany | |
lizard (Anolis carolinensis) |
Reptilia | FLRT1 34 |
|
OneToOne | |
tropical clawed frog (Silurana tropicalis) |
Amphibia | flrt1 33 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | flrt1a 33 34 |
|
||
flrt1b 34 |
|
OneToMany | |||
sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
ManyToMany | |
-- 34 |
|
ManyToMany |
- Species where no ortholog for FLRT1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FLRT1 Gene
Variants for FLRT1 Gene
SNP ID | Clin | Chr 11 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs116999073 | likely-benign, Peripheral neuropathy | 64,116,674(+) | A/G | coding_sequence_variant, missense_variant | |
rs138676741 | likely-benign, Peripheral neuropathy | 64,117,451(+) | C/T | coding_sequence_variant, missense_variant | |
rs139711112 | likely-benign, Peripheral neuropathy | 64,117,050(+) | C/T | coding_sequence_variant, synonymous_variant | |
rs139768227 | uncertain-significance, Peripheral neuropathy | 64,116,305(+) | C/G/T | coding_sequence_variant, missense_variant | |
rs140274429 | uncertain-significance, Peripheral neuropathy | 64,117,996(+) | G/A/C | coding_sequence_variant, missense_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv15n68 | CNV | loss | 17160897 |
esv2744613 | CNV | deletion | 23290073 |
esv3431264 | CNV | duplication | 20981092 |
nsv1078325 | CNV | duplication | 25765185 |
nsv1134139 | CNV | deletion | 24896259 |
nsv1141196 | CNV | duplication | 24896259 |
nsv356 | CNV | deletion | 18451855 |
nsv469961 | CNV | loss | 18288195 |
nsv473286 | CNV | novel sequence insertion | 20440878 |
nsv951010 | CNV | deletion | 24416366 |
Additional Variant Information for FLRT1 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FLRT1 Gene
Disorders for FLRT1 Gene
Disorder | Aliases | PubMed IDs |
---|---|---|
autosomal recessive spastic paraplegia type 68 |
|
|
Additional Disease Information for FLRT1
No data available for UniProtKB/Swiss-Prot and Genatlas for FLRT1 Gene
Publications for FLRT1 Gene
- Identification of FLRT1, FLRT2, and FLRT3: a novel family of transmembrane leucine-rich repeat proteins. (PMID: 10644439) Lacy SE … Kunkel LM (Genomics 1999) 2 3 4 58
- Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders. (PMID: 24482476) Novarino G … Gleeson JG (Science (New York, N.Y.) 2014) 2 3 58
- Critical role of FLRT1 phosphorylation in the interdependent regulation of FLRT1 function and FGF receptor signalling. (PMID: 20421966) Wheldon LM … Heath JK (PloS one 2010) 3 22 58
- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4 58
- Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 32 available FLRT1 Antibodies ranked by validation data
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- genomics-online: gRNA clones - Search results for 104 available FLRT1 gene related products
- Overview of 104 available FLRT1 gene related products
- genomics-online: primer clones - Search results for 104 available FLRT1 gene related products
- Overview of 104 available FLRT1 gene related products
- genomics-online: shRNA clones - Search results for 104 available FLRT1 gene related products
- Overview of 104 available FLRT1 gene related products
Sources for FLRT1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew