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Aliases for FLJ46906 Gene

Subcategory (RNA class) for FLJ46906 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ46906 Gene

  • Uncharacterized LOC441172 3
  • RP11-390P2.4 5

External Ids for FLJ46906 Gene

Previous GeneCards Identifiers for FLJ46906 Gene

  • GC06P139055
  • GC06U901051

Summaries for FLJ46906 Gene

GeneCards Summary for FLJ46906 Gene

FLJ46906 (Uncharacterized LOC441172) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ46906 Gene

Genomics for FLJ46906 Gene

Regulatory Elements for FLJ46906 Gene

Enhancers for FLJ46906 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G138591 1.3 Ensembl ENCODE 23.1 -97.5 -97479 4.8 FOXA2 ARID4B DMAP1 ZNF48 SLC30A9 GATA2 FOS ZNF263 SP5 JUNB FLJ46906 NHSL1 CCDC28A PERP LOC100129577 ENSG00000274594
GH06G138535 1.8 FANTOM5 Ensembl ENCODE dbSUPER 15 -149.9 -149944 12.8 PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 ZNF121 SLC30A9 NHSL1 FLJ46906 PERP HEBP2 PBOV1 ENSG00000274594 LOC100129577
GH06G138722 1.1 Ensembl ENCODE 16.4 +31.9 31936 2.0 ELF3 BMI1 RAD21 YY1 SCRT2 FOS CREM ZNF362 CEBPB JUNB FLJ46906 NHSL1 GC06P138738
GH06G138590 0.8 ENCODE 22.2 -100.6 -100600 0.2 ARID4B RAD21 SLC30A9 ZNF143 RELB MIXL1 THAP11 ZNF263 ZNF654 ZEB2 FLJ46906 CCDC28A NHSL1 PERP LOC100129577 ENSG00000274594
GH06G138689 1.3 ENCODE dbSUPER 12.8 +0.2 160 4.5 PKNOX1 ARNT ARID4B SIN3A ZNF2 ZNF48 ZBTB7B YY1 SLC30A9 GLIS2 FLJ46906 NHSL1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ46906 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ46906 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000203799 1032 2601 PKNOX1 ARNT ARID4B SIN3A ZNF2 ZNF48 ZBTB7B YY1 SLC30A9 GLIS2

Genomic Location for FLJ46906 Gene

Chromosome:
6
Start:
138,691,668 bp from pter
End:
138,697,288 bp from pter
Size:
5,621 bases
Orientation:
Plus strand

Genomic View for FLJ46906 Gene

Genes around FLJ46906 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ46906 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ46906 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ46906 Gene

Proteins for FLJ46906 Gene

Post-translational modifications for FLJ46906 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ46906 Gene

Domains & Families for FLJ46906 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ46906 Gene

Function for FLJ46906 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ46906 Gene

Localization for FLJ46906 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ46906 Gene

Pathways & Interactions for FLJ46906 Gene

SuperPathways for FLJ46906 Gene

No Data Available

Interacting Proteins for FLJ46906 Gene

Gene Ontology (GO) - Biological Process for FLJ46906 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ46906 Gene

Drugs & Compounds for FLJ46906 Gene

No Compound Related Data Available

Transcripts for FLJ46906 Gene

Unigene Clusters for FLJ46906 Gene

Uncharacterized LOC441172:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ46906 Gene

No ASD Table

Relevant External Links for FLJ46906 Gene

GeneLoc Exon Structure for
FLJ46906

Expression for FLJ46906 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ46906 Gene

SOURCE GeneReport for Unigene cluster for FLJ46906 Gene:

Hs.92290
genes like me logo Genes that share expression patterns with FLJ46906: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ46906 Gene

Orthologs for FLJ46906 Gene

Evolution for FLJ46906 Gene

ENSEMBL:
Gene Tree for FLJ46906 (if available)
TreeFam:
Gene Tree for FLJ46906 (if available)

No data available for Orthologs for FLJ46906 Gene

Paralogs for FLJ46906 Gene

No data available for Paralogs for FLJ46906 Gene

Variants for FLJ46906 Gene

Sequence variations from dbSNP and Humsavar for FLJ46906 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000173707 -- 138,693,660(+) TGGGC(C/T)GCCCG intron-variant, upstream-variant-2KB
rs1000204633 -- 138,693,979(+) ACACC(C/T)GCTAA intron-variant, upstream-variant-2KB
rs1000507752 -- 138,694,924(+) AAAAA(-/AC)AAAAA intron-variant
rs1000540339 -- 138,695,281(+) ATATC(C/G)CATTG intron-variant
rs1001489754 -- 138,691,051(+) TCCCA(C/T)GTACC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FLJ46906 Gene

Variant ID Type Subtype PubMed ID
esv2752090 CNV gain 17911159
nsv1122139 CNV deletion 24896259
nsv1124123 CNV deletion 24896259
nsv1144149 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ46906 Gene

Disorders for FLJ46906 Gene

Relevant External Links for FLJ46906

Genetic Association Database (GAD)
FLJ46906
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ46906

No disorders were found for FLJ46906 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ46906 Gene

Publications for FLJ46906 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FLJ46906 Gene

Sources for FLJ46906 Gene

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