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Aliases for FLJ46906 Gene

Subcategory (RNA class) for FLJ46906 Gene


Quality Score for this RNA gene is


Aliases for FLJ46906 Gene

  • Uncharacterized LOC441172 3
  • AL590617.2 5

External Ids for FLJ46906 Gene

Previous GeneCards Identifiers for FLJ46906 Gene

  • GC06P139055
  • GC06U901051

Summaries for FLJ46906 Gene

GeneCards Summary for FLJ46906 Gene

FLJ46906 (Uncharacterized LOC441172) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ46906 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ46906 Gene

Genomics for FLJ46906 Gene

GeneHancer (GH) Regulatory Elements for FLJ46906 Gene

Promoters and enhancers for FLJ46906 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I138689 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 562.8 +0.2 160 4.5 PKNOX1 ARNT ARID4B SIN3A ZNF2 ZBTB7B ZNF48 SLC30A9 GLIS2 ZNF143 FLJ46906 NHSL1
GH06I138535 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 15 -149.9 -149944 12.8 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF121 FOS NHSL1 FLJ46906 PERP HEBP2 PBOV1 ENSG00000274594 LOC100129577
GH06I138591 Enhancer 1.2 Ensembl ENCODE 23.1 -97.5 -97478 4.8 FOXA2 ARID4B DMAP1 IRF4 ZNF48 SLC30A9 ATF7 FOS RUNX3 RXRA FLJ46906 NHSL1 CCDC28A PERP LOC100129577 ENSG00000274594
GH06I138590 Enhancer 0.8 ENCODE 22.2 -100.6 -100599 0.2 FOXA2 RB1 ARID4B RAD21 SLC30A9 ZNF143 IKZF2 THAP11 MIXL1 ZNF654 FLJ46906 CCDC28A NHSL1 PERP LOC100129577 ENSG00000274594
GH06I138722 Enhancer 1 Ensembl ENCODE 16.4 +31.9 31935 2 ELF3 BMI1 RAD21 YY1 ZNF335 SCRT2 ATF7 IKZF2 ZNF362 RXRA FLJ46906 NHSL1 GC06P138738
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ46906 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FLJ46906 gene promoter:

Genomic Locations for FLJ46906 Gene

Genomic Locations for FLJ46906 Gene
5,621 bases
Plus strand

Genomic View for FLJ46906 Gene

Genes around FLJ46906 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ46906 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ46906 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ46906 Gene

Proteins for FLJ46906 Gene

Post-translational modifications for FLJ46906 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ46906 Gene

Domains & Families for FLJ46906 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ46906 Gene

Function for FLJ46906 Gene

Phenotypes From GWAS Catalog for FLJ46906 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ46906 Gene

Localization for FLJ46906 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ46906 Gene

Pathways & Interactions for FLJ46906 Gene

SuperPathways for FLJ46906 Gene

No Data Available

Interacting Proteins for FLJ46906 Gene

Gene Ontology (GO) - Biological Process for FLJ46906 Gene


No data available for Pathways by source and SIGNOR curated interactions for FLJ46906 Gene

Drugs & Compounds for FLJ46906 Gene

No Compound Related Data Available

Transcripts for FLJ46906 Gene

Unigene Clusters for FLJ46906 Gene

Uncharacterized LOC441172:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ46906 Gene

No ASD Table

Relevant External Links for FLJ46906 Gene

GeneLoc Exon Structure for

Expression for FLJ46906 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ46906 Gene

SOURCE GeneReport for Unigene cluster for FLJ46906 Gene:

genes like me logo Genes that share expression patterns with FLJ46906: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ46906 Gene

Orthologs for FLJ46906 Gene

Evolution for FLJ46906 Gene

Gene Tree for FLJ46906 (if available)
Gene Tree for FLJ46906 (if available)

No data available for Orthologs for FLJ46906 Gene

Paralogs for FLJ46906 Gene

No data available for Paralogs for FLJ46906 Gene

Variants for FLJ46906 Gene

Sequence variations from dbSNP and Humsavar for FLJ46906 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000173707 -- 138,693,660(+) C/T intron_variant
rs1000204633 -- 138,693,979(+) C/A/T intron_variant
rs1000507752 -- 138,694,925(+) A/ACA intron_variant
rs1000540339 -- 138,695,281(+) C/G intron_variant
rs1001489754 -- 138,691,051(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ46906 Gene

Variant ID Type Subtype PubMed ID
esv2752090 CNV gain 17911159
nsv1122139 CNV deletion 24896259
nsv1124123 CNV deletion 24896259
nsv1144149 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ46906 Gene

Disorders for FLJ46906 Gene

Additional Disease Information for FLJ46906

No disorders were found for FLJ46906 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ46906 Gene

Publications for FLJ46906 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FLJ46906 Gene

Sources for FLJ46906 Gene

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