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Aliases for FLJ45079 Gene

Subcategory (RNA class) for FLJ45079 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ45079 Gene

  • FLJ45079 Protein 3

External Ids for FLJ45079 Gene

ORGUL Members for FLJ45079 Gene

Previous GeneCards Identifiers for FLJ45079 Gene

  • GC17M076472
  • GC17M073386
  • GC17M075875

Summaries for FLJ45079 Gene

GeneCards Summary for FLJ45079 Gene

FLJ45079 (FLJ45079 Protein) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ45079 Gene

Genomics for FLJ45079 Gene

Regulatory Elements for FLJ45079 Gene

Genomic Location for FLJ45079 Gene

Start:
77,879,001 bp from pter
End:
77,884,087 bp from pter
Size:
5,087 bases
Orientation:
Minus strand

Genomic View for FLJ45079 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FLJ45079 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ45079 Gene

Proteins for FLJ45079 Gene

  • Protein details for FLJ45079 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q6ZRC4
    Recommended name:
    FLJ45079 protein
    Protein Accession:
    Q6ZRC4
    Secondary Accessions:

    Protein attributes for FLJ45079 Gene

    Size:
    154 amino acids
    Molecular mass:
    17561 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FLJ45079 Gene

Proteomics data for FLJ45079 Gene at MOPED

Post-translational modifications for FLJ45079 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ45079 Gene

Domains for FLJ45079 Gene

Protein Domains for FLJ45079 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FLJ45079 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FLJ45079: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FLJ45079 Gene

Function for FLJ45079 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FLJ45079 Gene

Localization for FLJ45079 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FLJ45079 Gene COMPARTMENTS Subcellular localization image for FLJ45079 gene
Compartment Confidence
extracellular 3
cytosol 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FLJ45079 Gene

Pathways for FLJ45079 Gene

SuperPathways for FLJ45079 Gene

No Data Available

Interacting Proteins for FLJ45079 Gene

Gene Ontology (GO) - Biological Process for FLJ45079 Gene

None

No data available for Pathways by source for FLJ45079 Gene

Transcripts for FLJ45079 Gene

mRNA/cDNA for FLJ45079 Gene

(4) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ45079 Gene

FLJ45079 protein:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FLJ45079

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ45079 Gene

No ASD Table

Relevant External Links for FLJ45079 Gene

GeneLoc Exon Structure for
FLJ45079

Expression for FLJ45079 Gene

mRNA expression in normal human tissues for FLJ45079 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for FLJ45079 Gene Hs.514521

genes like me logo Genes that share expressions with FLJ45079: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for FLJ45079 Gene

Orthologs for FLJ45079 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for FLJ45079 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Dbpht2 16
Species with no ortholog for FLJ45079:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FLJ45079 Gene

ENSEMBL:
Gene Tree for FLJ45079 (if available)
TreeFam:
Gene Tree for FLJ45079 (if available)

Paralogs for FLJ45079 Gene

No data available for Paralogs for FLJ45079 Gene

Variants for FLJ45079 Gene

Sequence variations from dbSNP and Humsavar for FLJ45079 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs894545 -- 77,881,147(-) GAAGT(A/G)CCCAT nc-transcript-variant
rs894546 -- 77,880,631(-) GCAGG(C/T)TCTGT nc-transcript-variant
rs2077228 -- 77,881,423(-) CAAAC(A/G)GCATC nc-transcript-variant
rs3935192 -- 77,882,759(-) TGGCT(C/T)GCTCA nc-transcript-variant
rs5822224 -- 77,881,383(+) CACAA(-/CAA)GCTCT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ45079 Gene

Variant ID Type Subtype PubMed ID
nsv908859 CNV Loss 21882294

Relevant External Links for FLJ45079 Gene

HapMap Linkage Disequilibrium report
FLJ45079

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FLJ45079 Gene

Disorders for FLJ45079 Gene

Relevant External Links for FLJ45079

Genetic Association Database (GAD)
FLJ45079

No disorders were found for FLJ45079 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for FLJ45079 Gene

Publications for FLJ45079 Gene

  1. Genome-wide association study of Alzheimer's disease with psychotic symptoms. (PMID: 22005930) Hollingworth P. … Williams J. (Mol. Psychiatry 2012) 48

Products for FLJ45079 Gene

Sources for FLJ45079 Gene

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