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Aliases for FLJ42969 Gene

Subcategory (RNA class) for FLJ42969 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ42969 Gene

  • Uncharacterized LOC441374 3 5

External Ids for FLJ42969 Gene

Previous GeneCards Identifiers for FLJ42969 Gene

  • GC08P102134
  • GC08U900741

Summaries for FLJ42969 Gene

GeneCards Summary for FLJ42969 Gene

FLJ42969 (Uncharacterized LOC441374) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42969 Gene

Genomics for FLJ42969 Gene

Regulatory Elements for FLJ42969 Gene

Enhancers for FLJ42969 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F101050 0.7 Ensembl ENCODE 20.5 +0.2 226 2.8 PKNOX1 ATF1 ARNT SIN3A GATA2 FOS GTF2B NCOA1 REST SMARCB1 FLJ42969 PABPC1 LOC105375674
GH08F101041 1 Ensembl ENCODE 8.7 -9.8 -9757 1.8 TEAD4 CEBPB MAX MAFG ZIC2 GABPA ZNF316 JUND GATA3 ATF3 FLJ42969 YWHAZ LOC401471
GH08F101025 1.6 FANTOM5 Ensembl ENCODE 7.9 -24.9 -24933 3.4 TBP HDAC1 PKNOX1 SIN3A RAD21 BRCA1 RFX5 ZNF143 RCOR1 FOS YWHAZ FLJ42969 ZNF706 GRHL2 PABPC1 LOC401471
GH08F100905 1.3 FANTOM5 Ensembl ENCODE 6.6 -144.1 -144054 4.8 HDGF PKNOX1 ZFP64 ARID4B SIN3A BRCA1 GLIS2 FOS SP3 NFYC YWHAZ ANKRD46 FLJ42969 ZNF706 PABPC1 ENSG00000260368 ENSG00000275041
GH08F101012 0.2 ENCODE 5.2 -39.3 -39309 1.2 RFX1 JUN MNT DPF2 SREBF1 CTBP1 GATA3 RCOR1 CUX1 FOSL2 FLJ42969 YWHAZ LOC401471
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FLJ42969 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ42969 Gene

Chromosome:
8
Start:
101,052,054 bp from pter
End:
101,076,251 bp from pter
Size:
24,198 bases
Orientation:
Plus strand

Genomic View for FLJ42969 Gene

Genes around FLJ42969 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42969 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42969 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42969 Gene

Proteins for FLJ42969 Gene

Post-translational modifications for FLJ42969 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42969 Gene

Domains & Families for FLJ42969 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42969 Gene

Function for FLJ42969 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42969 Gene

Localization for FLJ42969 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ42969 Gene

Pathways & Interactions for FLJ42969 Gene

SuperPathways for FLJ42969 Gene

No Data Available

Interacting Proteins for FLJ42969 Gene

Gene Ontology (GO) - Biological Process for FLJ42969 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ42969 Gene

Transcripts for FLJ42969 Gene

mRNA/cDNA for FLJ42969 Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42969 Gene

Uncharacterized LOC441374:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42969 Gene

No ASD Table

Relevant External Links for FLJ42969 Gene

GeneLoc Exon Structure for
FLJ42969

Expression for FLJ42969 Gene

mRNA expression in normal human tissues for FLJ42969 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ42969 Gene

This gene is overexpressed in Heart - Left Ventricle (x14.6), Adrenal Gland (x5.1), and Heart - Atrial Appendage (x4.2).

SOURCE GeneReport for Unigene cluster for FLJ42969 Gene:

Hs.652045
genes like me logo Genes that share expression patterns with FLJ42969: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ42969 Gene

Orthologs for FLJ42969 Gene

Evolution for FLJ42969 Gene

ENSEMBL:
Gene Tree for FLJ42969 (if available)
TreeFam:
Gene Tree for FLJ42969 (if available)

No data available for Orthologs for FLJ42969 Gene

Paralogs for FLJ42969 Gene

No data available for Paralogs for FLJ42969 Gene

Variants for FLJ42969 Gene

Sequence variations from dbSNP and Humsavar for FLJ42969 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10505004 -- 101,076,129(-) ACTTC(A/T)GTGTT nc-transcript-variant
rs111231476 -- 101,054,810(+) CTGCC(A/G)CTTCC intron-variant
rs111506053 -- 101,060,955(+) ATTTG(C/T)GTATA intron-variant
rs111574828 -- 101,075,418(+) TGATG(A/C)CCCCC nc-transcript-variant
rs111575629 -- 101,053,922(+) TGCAA(C/G)CTCCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42969 Gene

Variant ID Type Subtype PubMed ID
nsv1161784 CNV deletion 26073780
nsv524119 CNV gain 19592680
nsv831409 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ42969 Gene

Disorders for FLJ42969 Gene

Relevant External Links for FLJ42969

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ42969

No disorders were found for FLJ42969 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ42969 Gene

Publications for FLJ42969 Gene

No publications were found for FLJ42969 Gene.

Products for FLJ42969 Gene

Sources for FLJ42969 Gene

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