Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FLJ42627 Gene

Subcategory (RNA class) for FLJ42627 Gene

antisense

Quality Score for this RNA gene is

2

Aliases for FLJ42627 Gene

  • Uncharacterized LOC645644 3

External Ids for FLJ42627 Gene

Previous GeneCards Identifiers for FLJ42627 Gene

  • GC16P002625
  • GC16U900928
  • GC16M002530
  • GC16P002688

Summaries for FLJ42627 Gene

GeneCards Summary for FLJ42627 Gene

FLJ42627 (Uncharacterized LOC645644) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42627 Gene

Genomics for FLJ42627 Gene

Regulatory Elements for FLJ42627 Gene

Genomic Location for FLJ42627 Gene

Start:
2,638,982 bp from pter
End:
2,646,129 bp from pter
Size:
7,148 bases
Orientation:
Plus strand

Genomic View for FLJ42627 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FLJ42627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42627 Gene

Proteins for FLJ42627 Gene

Post-translational modifications for FLJ42627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42627 Gene

Domains for FLJ42627 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42627 Gene

Function for FLJ42627 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FLJ42627 Gene

Localization for FLJ42627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ42627 Gene

Pathways for FLJ42627 Gene

SuperPathways for FLJ42627 Gene

No Data Available

Interacting Proteins for FLJ42627 Gene

Gene Ontology (GO) - Biological Process for FLJ42627 Gene

None

No data available for Pathways by source for FLJ42627 Gene

Transcripts for FLJ42627 Gene

mRNA/cDNA for FLJ42627 Gene

(6) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42627 Gene

Uncharacterized LOC645644:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FLJ42627

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for FLJ42627
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42627 Gene

No ASD Table

Relevant External Links for FLJ42627 Gene

GeneLoc Exon Structure for
FLJ42627

Expression for FLJ42627 Gene

mRNA expression in normal human tissues for FLJ42627 Gene

SOURCE GeneReport for Unigene cluster for FLJ42627 Gene Hs.597810

genes like me logo Genes that share expressions with FLJ42627: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for FLJ42627 Gene

Orthologs for FLJ42627 Gene

Evolution for FLJ42627 Gene

ENSEMBL:
Gene Tree for FLJ42627 (if available)
TreeFam:
Gene Tree for FLJ42627 (if available)

No data available for Orthologs for FLJ42627 Gene

Paralogs for FLJ42627 Gene

No data available for Paralogs for FLJ42627 Gene

Variants for FLJ42627 Gene

Sequence variations from dbSNP and Humsavar for FLJ42627 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs2965991 -- 2,637,484(+) GCAGC(A/G)CATCT upstream-variant-2KB
rs2965994 -- 2,639,954(-) CGGTG(C/T)TCGTT nc-transcript-variant
rs3112689 -- 2,637,202(+) GGAGC(C/T)GCCCC upstream-variant-2KB
rs3112690 -- 2,640,666(+) ACATA(C/T)AAGGA nc-transcript-variant
rs3112692 -- 2,642,164(+) AGCCC(C/T)GAGGA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42627 Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
dgv2545n71 CNV Loss 21882294
nsv905139 CNV Loss 21882294
dgv2570n71 CNV Loss 21882294
nsv905149 CNV Loss 21882294
nsv905152 CNV Loss 21882294
dgv793e1 CNV Complex 17122850
nsv833122 CNV Loss 17160897
nsv7275 OTHER Inversion 18451855
nsv833123 CNV Gain+Loss 17160897
esv33514 CNV Gain+Loss 17666407
esv29849 CNV Gain+Loss 19812545
esv2750386 CNV Deletion 23290073
esv8446 CNV Loss 19470904
nsv510672 CNV Loss 20534489
nsv827518 CNV Gain 20364138
nsv827519 CNV Gain 20364138
esv2421848 CNV Duplication 20811451
nsv905157 CNV Gain 21882294
nsv905158 CNV Loss 21882294

Relevant External Links for FLJ42627 Gene

HapMap Linkage Disequilibrium report
FLJ42627

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FLJ42627 Gene

Disorders for FLJ42627 Gene

No disorders were found for FLJ42627 Gene.

No data available for UniProtKB/Swiss-Prot for FLJ42627 Gene

Publications for FLJ42627 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for FLJ42627 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FLJ42627
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FLJ42627
    • Block miRNA regulation of FLJ42627 using miScript Target Protectors

    Sources for FLJ42627 Gene

    Back to Top

    Content