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Aliases for FLJ42393 Gene

Subcategory (RNA class) for FLJ42393 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ42393 Gene

  • Uncharacterized LOC401105 3 5
  • AVPC1948 3

External Ids for FLJ42393 Gene

Previous GeneCards Identifiers for FLJ42393 Gene

  • GC03P189217
  • GC03P189379
  • GC03P187897

Summaries for FLJ42393 Gene

GeneCards Summary for FLJ42393 Gene

FLJ42393 (Uncharacterized LOC401105) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ42393 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42393 Gene

Genomics for FLJ42393 Gene

GeneHancer (GH) Regulatory Elements for FLJ42393 Gene

Promoters and enhancers for FLJ42393 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I188177 Enhancer 0.9 Ensembl ENCODE dbSUPER 550.8 +0.6 553 2.9 CTCF SCRT1 ZNF366 SCRT2 HNF4A RAD21 PRDM1 FLJ42393 ENSG00000234238 RTP4 LPP LPP-AS1
GH03I188184 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.3 7339 3.2 ELF3 PKNOX1 FOXA2 MLX ARID4B FEZF1 ZNF48 ZSCAN9 RAD21 RARA ENSG00000234238 LPP BCL6 FLJ42393 LPP-AS1
GH03I188152 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 0.3 -22.5 -22483 8.1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 DEK SP3 SP5 LPP-AS2 LOC100131635 LPP FLJ42393
GH03I188163 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.8 -12802 3.6 CTCF ESRRA FOXA2 MAX RAD21 RARA ZNF121 CTBP1 GATA3 PRDM10 BCL6 BCL6-AS1 TPRG1-AS1 FLJ42393 LPP LPP-AS2
GH03I188170 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -7.1 -7126 1.8 FOXA2 MLX ARID4B ETS1 YY1 SLC30A9 ATF7 FOS RXRA SP5 BCL6 BCL6-AS1 ENSG00000234238 SST LOC100131635 FLJ42393 LPP-AS2 LPP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ42393 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FLJ42393 gene promoter:

Genomic Locations for FLJ42393 Gene

Genomic Locations for FLJ42393 Gene
chr3:188,178,543-188,180,812
(GRCh38/hg38)
Size:
2,270 bases
Orientation:
Plus strand
chr3:187,896,331-187,898,598
(GRCh37/hg19)

Genomic View for FLJ42393 Gene

Genes around FLJ42393 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42393 Gene

Proteins for FLJ42393 Gene

Post-translational modifications for FLJ42393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42393 Gene

Domains & Families for FLJ42393 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42393 Gene

Function for FLJ42393 Gene

Phenotypes From GWAS Catalog for FLJ42393 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42393 Gene

Localization for FLJ42393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ42393 Gene

Pathways & Interactions for FLJ42393 Gene

SuperPathways for FLJ42393 Gene

No Data Available

Interacting Proteins for FLJ42393 Gene

Gene Ontology (GO) - Biological Process for FLJ42393 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ42393 Gene

Drugs & Compounds for FLJ42393 Gene

No Compound Related Data Available

Transcripts for FLJ42393 Gene

mRNA/cDNA for FLJ42393 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42393 Gene

Uncharacterized LOC401105:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42393 Gene

No ASD Table

Relevant External Links for FLJ42393 Gene

GeneLoc Exon Structure for
FLJ42393

Expression for FLJ42393 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ42393 Gene

mRNA expression in normal human tissues for FLJ42393 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ42393 Gene

This gene is overexpressed in Heart - Left Ventricle (x13.2) and Heart - Atrial Appendage (x9.3).

SOURCE GeneReport for Unigene cluster for FLJ42393 Gene:

Hs.679026
genes like me logo Genes that share expression patterns with FLJ42393: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ42393 Gene

Orthologs for FLJ42393 Gene

Evolution for FLJ42393 Gene

ENSEMBL:
Gene Tree for FLJ42393 (if available)
TreeFam:
Gene Tree for FLJ42393 (if available)

No data available for Orthologs for FLJ42393 Gene

Paralogs for FLJ42393 Gene

No data available for Paralogs for FLJ42393 Gene

Variants for FLJ42393 Gene

Sequence variations from dbSNP and Humsavar for FLJ42393 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1001101535 -- 188,178,976(+) GAGAGAGAGAG/GAGAGAGAG non_coding_transcript_variant
rs1001321431 -- 188,178,784(+) C/A/T non_coding_transcript_variant
rs1002156270 -- 188,177,965(+) A/G upstream_transcript_variant
rs1003527924 -- 188,177,310(+) G/A upstream_transcript_variant
rs1004071712 -- 188,177,577(+) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42393 Gene

Variant ID Type Subtype PubMed ID
esv2751987 CNV gain 17911159
esv34193 CNV loss 18971310
nsv1003486 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ42393 Gene

Disorders for FLJ42393 Gene

Additional Disease Information for FLJ42393

No disorders were found for FLJ42393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ42393 Gene

Publications for FLJ42393 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FLJ42393 Gene

Sources for FLJ42393 Gene

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