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Aliases for FLJ42393 Gene

Subcategory (RNA class) for FLJ42393 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ42393 Gene

  • Uncharacterized LOC401105 3 5
  • AVPC1948 3

External Ids for FLJ42393 Gene

Previous GeneCards Identifiers for FLJ42393 Gene

  • GC03P189217
  • GC03P189379
  • GC03P187897

Summaries for FLJ42393 Gene

GeneCards Summary for FLJ42393 Gene

FLJ42393 (Uncharacterized LOC401105) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42393 Gene

Genomics for FLJ42393 Gene

Regulatory Elements for FLJ42393 Gene

Enhancers for FLJ42393 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F188177 1 Ensembl ENCODE 0.8 +0.6 554 2.9 SCRT1 CTCF BHLHE40 RAD21 NR2F2 JUND ZNF366 SCRT2 PRDM1 RTP4 FLJ42393 LPP-AS1
GH03F188174 0.2 Ensembl 0.8 -3.6 -3643 1.0 GATA3 SMARCA4 POLR2A CEBPB ZIC2 FLJ42393 LPP-AS2
GH03F188184 1.3 FANTOM5 Ensembl ENCODE 0.4 +7.5 7458 3.6 ELF3 PKNOX1 MLX ARID4B FEZF1 ZNF48 ZSCAN9 RAD21 RARA YY1 LPP BCL6 FLJ42393 LPP-AS1
GH03F188169 1 Ensembl ENCODE 0.4 -7.6 -7576 2.7 ATF1 MLX ARID4B ZNF48 YY1 SLC30A9 FOS SP5 MXD4 MIER2 BCL6 ENSG00000223401 SST LOC100131635 FLJ42393 LPP-AS2
GH03F188183 0.3 FANTOM5 0.4 +5.1 5134 0.3 ZFHX2 JUNB ETV6 FOS CREM LPP FLJ42393 LPP-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FLJ42393 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ42393 Gene

Chromosome:
3
Start:
188,178,543 bp from pter
End:
188,180,812 bp from pter
Size:
2,270 bases
Orientation:
Plus strand

Genomic View for FLJ42393 Gene

Genes around FLJ42393 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42393 Gene

Proteins for FLJ42393 Gene

Post-translational modifications for FLJ42393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42393 Gene

Domains & Families for FLJ42393 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42393 Gene

Function for FLJ42393 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42393 Gene

Localization for FLJ42393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ42393 Gene

Pathways & Interactions for FLJ42393 Gene

SuperPathways for FLJ42393 Gene

No Data Available

Interacting Proteins for FLJ42393 Gene

Gene Ontology (GO) - Biological Process for FLJ42393 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ42393 Gene

Transcripts for FLJ42393 Gene

mRNA/cDNA for FLJ42393 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42393 Gene

Uncharacterized LOC401105:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42393 Gene

No ASD Table

Relevant External Links for FLJ42393 Gene

GeneLoc Exon Structure for
FLJ42393

Expression for FLJ42393 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ42393 Gene

mRNA expression in normal human tissues for FLJ42393 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ42393 Gene

This gene is overexpressed in Heart - Left Ventricle (x13.2) and Heart - Atrial Appendage (x9.3).

SOURCE GeneReport for Unigene cluster for FLJ42393 Gene:

Hs.679026
genes like me logo Genes that share expression patterns with FLJ42393: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ42393 Gene

Orthologs for FLJ42393 Gene

Evolution for FLJ42393 Gene

ENSEMBL:
Gene Tree for FLJ42393 (if available)
TreeFam:
Gene Tree for FLJ42393 (if available)

No data available for Orthologs for FLJ42393 Gene

Paralogs for FLJ42393 Gene

No data available for Paralogs for FLJ42393 Gene

Variants for FLJ42393 Gene

Sequence variations from dbSNP and Humsavar for FLJ42393 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10616335 -- 188,179,039(+) GAGAC(-/AG)AGAGA intron-variant, nc-transcript-variant
rs111396505 -- 188,178,434(+) CTGTT(C/T)GCTTT intron-variant, upstream-variant-2KB
rs112175240 -- 188,179,081(+) GAGAG(A/G)GAGGG intron-variant, nc-transcript-variant
rs112324314 -- 188,177,290(+) CCTGG(A/G)AAGGA intron-variant, upstream-variant-2KB
rs112379119 -- 188,179,765(+) GCTTC(C/G)CCTCT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42393 Gene

Variant ID Type Subtype PubMed ID
esv2751987 CNV gain 17911159
esv34193 CNV loss 18971310
nsv1003486 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ42393 Gene

Disorders for FLJ42393 Gene

Relevant External Links for FLJ42393

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ42393

No disorders were found for FLJ42393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ42393 Gene

Publications for FLJ42393 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FLJ42393 Gene

Sources for FLJ42393 Gene

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