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Aliases for FLJ42351 Gene

Subcategory (RNA class) for FLJ42351 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ42351 Gene

  • Uncharacterized LOC400999 3
  • AC079922.3 5

External Ids for FLJ42351 Gene

Previous GeneCards Identifiers for FLJ42351 Gene

  • GC02M113116
  • GC02U900967
  • GC02M113401

Summaries for FLJ42351 Gene

GeneCards Summary for FLJ42351 Gene

FLJ42351 (Uncharacterized LOC400999) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42351 Gene

Genomics for FLJ42351 Gene

Regulatory Elements for FLJ42351 Gene

Enhancers for FLJ42351 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G112639 1.7 FANTOM5 Ensembl ENCODE dbSUPER 40.7 +4.6 4575 2.4 ELF3 PKNOX1 NFRKB NFXL1 EGR1 FOS CREM ZNF263 SMAD5 ZBTB11 FLJ42351 ENSG00000243389 CHCHD5 ENSG00000207383 IL1B POLR1B RPS20P11
GH02G112642 1.7 Ensembl ENCODE dbSUPER 40.4 -0.4 -371 6.6 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC FLJ42351 TMEM87B RPS20P11 ENSG00000243389 CHCHD5 ENSG00000207383 POLR1B PIR36945 SLC20A1
GH02G112621 2 FANTOM5 Ensembl ENCODE dbSUPER 31.6 +18.3 18346 11.8 HDGF PKNOX1 FOXA2 ARNT CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 FLJ42351 POLR1B CHCHD5 NT5DC4 ENSG00000243389 ENSG00000207383 IL37 IL1B ANAPC1 IL1A
GH02G112690 2 FANTOM5 Ensembl ENCODE dbSUPER 18.3 -46.5 -46538 3.4 HDGF FOXA2 MLX CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 ZNF766 ZNF143 IL1RN FLJ42351 IL36B SLC20A1 IL1B ENSG00000243389 CHCHD5 ENSG00000207383 IL36G IL1A
GH02G112665 0.9 ENCODE dbSUPER 37.4 -20.0 -20005 0.4 FOXA2 ZNF197 CEBPB ZNF175 CEBPG ZBTB7A TBX3 ZNF766 ZNF589 ATF3 FLJ42351 GC02P113172 LOC102724955
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ42351 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ42351 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000121958 -410 2201 HDGF PKNOX1 MLX CREB3L1 AGO1 ARID4B SIN3A DMAP1 YY1 SLC30A9

Genomic Location for FLJ42351 Gene

Chromosome:
2
Start:
112,641,830 bp from pter
End:
112,645,690 bp from pter
Size:
3,861 bases
Orientation:
Minus strand

Genomic View for FLJ42351 Gene

Genes around FLJ42351 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42351 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42351 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42351 Gene

Proteins for FLJ42351 Gene

Post-translational modifications for FLJ42351 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42351 Gene

Domains & Families for FLJ42351 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42351 Gene

Function for FLJ42351 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42351 Gene

Localization for FLJ42351 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ42351 Gene

Pathways & Interactions for FLJ42351 Gene

SuperPathways for FLJ42351 Gene

No Data Available

Interacting Proteins for FLJ42351 Gene

Gene Ontology (GO) - Biological Process for FLJ42351 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ42351 Gene

Drugs & Compounds for FLJ42351 Gene

No Compound Related Data Available

Transcripts for FLJ42351 Gene

mRNA/cDNA for FLJ42351 Gene

(3) Additional mRNA sequences :
(23) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42351 Gene

Uncharacterized LOC400999:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42351 Gene

No ASD Table

Relevant External Links for FLJ42351 Gene

GeneLoc Exon Structure for
FLJ42351

Expression for FLJ42351 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ42351 Gene

SOURCE GeneReport for Unigene cluster for FLJ42351 Gene:

Hs.585221
genes like me logo Genes that share expression patterns with FLJ42351: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ42351 Gene

Orthologs for FLJ42351 Gene

Evolution for FLJ42351 Gene

ENSEMBL:
Gene Tree for FLJ42351 (if available)
TreeFam:
Gene Tree for FLJ42351 (if available)

No data available for Orthologs for FLJ42351 Gene

Paralogs for FLJ42351 Gene

No data available for Paralogs for FLJ42351 Gene

Variants for FLJ42351 Gene

Sequence variations from dbSNP and Humsavar for FLJ42351 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000524928 -- 112,643,380(+) TCATT(A/T)TAAAC intron-variant
rs1000677527 -- 112,642,463(+) ATGCA(C/T)CACCG intron-variant
rs1000930307 -- 112,641,562(+) TTCCC(C/T)CACCT downstream-variant-500B
rs1001794621 -- 112,641,849(+) ACTTT(A/G)TTTCT nc-transcript-variant
rs1002594851 -- 112,645,612(+) TAACC(C/G)CGCAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FLJ42351 Gene

Variant ID Type Subtype PubMed ID
nsv458997 CNV gain 19166990
nsv470480 CNV gain 18288195
nsv582708 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ42351 Gene

Disorders for FLJ42351 Gene

Relevant External Links for FLJ42351

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ42351

No disorders were found for FLJ42351 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ42351 Gene

Publications for FLJ42351 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FLJ42351 Gene

Sources for FLJ42351 Gene

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