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Aliases for FLJ42351 Gene

Subcategory (RNA class) for FLJ42351 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ42351 Gene

  • Uncharacterized LOC400999 3
  • AC079922.3 5

External Ids for FLJ42351 Gene

Previous GeneCards Identifiers for FLJ42351 Gene

  • GC02M113116
  • GC02U900967
  • GC02M113401

Summaries for FLJ42351 Gene

GeneCards Summary for FLJ42351 Gene

FLJ42351 (Uncharacterized LOC400999) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42351 Gene

Genomics for FLJ42351 Gene

Regulatory Elements for FLJ42351 Gene

Enhancers for FLJ42351 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F112621 1.7 FANTOM5 Ensembl ENCODE 31.6 +18.3 18346 11.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 CBX5 FLJ42351 POLR1B CHCHD5 NT5DC4 ENSG00000243389 ENSG00000207383 IL37 IL1B ANAPC1 IL1A
GH02F112639 1.2 FANTOM5 ENCODE 40.7 +4.6 4575 2.4 ELF3 NFRKB NFXL1 FOS CREM ZNF263 JUNB REST MBD2 POLR2H FLJ42351 ENSG00000243389 CHCHD5 ENSG00000207383 IL1B POLR1B RPS20P11
GH02F112642 1.2 ENCODE 40.5 -0.4 -371 6.6 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 FLJ42351 TMEM87B RPS20P11 ENSG00000243389 CHCHD5 ENSG00000207383 ANAPC1 POLR1B SLC20A1 PIR36945
GH02F112690 1.8 FANTOM5 Ensembl ENCODE 18.3 -46.5 -46511 3.6 HDGF MLX WRNIP1 ARID4B FEZF1 FOS ZNF263 SP3 NFYC JUNB IL1RN FLJ42351 IL36B SLC20A1 IL1B ENSG00000243389 CHCHD5 ENSG00000207383 IL36G IL1A
GH02F112633 1.1 FANTOM5 Ensembl ENCODE 28.9 +11.0 11024 2.2 IKZF1 MXD3 SCRT2 NBN TBX21 FLJ42351 ENSG00000243389 CHCHD5 ENSG00000207383 IL1B IL1A IL37 RPS20P11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ42351 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ42351 Gene

Chromosome:
2
Start:
112,641,830 bp from pter
End:
112,645,690 bp from pter
Size:
3,861 bases
Orientation:
Minus strand

Genomic View for FLJ42351 Gene

Genes around FLJ42351 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42351 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42351 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42351 Gene

Proteins for FLJ42351 Gene

Post-translational modifications for FLJ42351 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42351 Gene

Domains & Families for FLJ42351 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42351 Gene

Function for FLJ42351 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42351 Gene

Localization for FLJ42351 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ42351 Gene

Pathways & Interactions for FLJ42351 Gene

SuperPathways for FLJ42351 Gene

No Data Available

Interacting Proteins for FLJ42351 Gene

Gene Ontology (GO) - Biological Process for FLJ42351 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ42351 Gene

Transcripts for FLJ42351 Gene

mRNA/cDNA for FLJ42351 Gene

(3) Additional mRNA sequences :
(23) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42351 Gene

Uncharacterized LOC400999:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42351 Gene

No ASD Table

Relevant External Links for FLJ42351 Gene

GeneLoc Exon Structure for
FLJ42351

Expression for FLJ42351 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ42351 Gene

SOURCE GeneReport for Unigene cluster for FLJ42351 Gene:

Hs.585221
genes like me logo Genes that share expression patterns with FLJ42351: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ42351 Gene

Orthologs for FLJ42351 Gene

Evolution for FLJ42351 Gene

ENSEMBL:
Gene Tree for FLJ42351 (if available)
TreeFam:
Gene Tree for FLJ42351 (if available)

No data available for Orthologs for FLJ42351 Gene

Paralogs for FLJ42351 Gene

No data available for Paralogs for FLJ42351 Gene

Variants for FLJ42351 Gene

Sequence variations from dbSNP and Humsavar for FLJ42351 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1061254 -- 112,644,953(-) TTAGG(A/G)TGTAG upstream-variant-2KB
rs11123144 -- 112,646,085(+) CGCTG(C/T)CGCCT upstream-variant-2KB, utr-variant-5-prime
rs111966115 -- 112,643,243(+) GAGCC(A/G)CAACA nc-transcript-variant
rs112406446 -- 112,643,775(+) ACAAC(C/T)GACGG intron-variant
rs112763046 -- 112,643,248(+) ACAAC(A/C)CTGTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42351 Gene

Variant ID Type Subtype PubMed ID
nsv458997 CNV gain 19166990
nsv470480 CNV gain 18288195
nsv582708 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ42351 Gene

Disorders for FLJ42351 Gene

Relevant External Links for FLJ42351

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ42351

No disorders were found for FLJ42351 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ42351 Gene

Publications for FLJ42351 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FLJ42351 Gene

Sources for FLJ42351 Gene

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