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Aliases for FLJ42102 Gene

Subcategory (RNA class) for FLJ42102 Gene


Quality Score for this RNA gene is


Aliases for FLJ42102 Gene

  • Uncharacterized LOC399923 3 5

External Ids for FLJ42102 Gene

Previous GeneCards Identifiers for FLJ42102 Gene

  • GC11M070843
  • GC11M070794
  • GC11U901356
  • GC11M071096

Summaries for FLJ42102 Gene

GeneCards Summary for FLJ42102 Gene

FLJ42102 (Uncharacterized LOC399923) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42102 Gene

Genomics for FLJ42102 Gene

Regulatory Elements for FLJ42102 Gene

Enhancers for FLJ42102 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F071420 0.6 ENCODE 0.8 +2.8 2814 0.2 CTCF ZNF654 IKZF1 SMC3 STAT3 TRIM22 REST RAD21 FLJ42102 SHANK2
GH11F071432 1.1 Ensembl ENCODE 0.4 -10.2 -10177 4.6 ELF3 PKNOX1 ARID4B RARA YY1 SLC30A9 CREM PAF1 SMARCC1 SP5 NADSYN1 ENSG00000254682 FLJ42102
GH11F071418 0.5 ENCODE 0.8 +4.7 4740 1.4 PKNOX1 MTA2 IKZF1 EP300 NADSYN1 ENSG00000254682 DHCR7 FLJ42102 SHANK2
GH11F071428 0.5 ENCODE 0.4 -6.1 -6089 1.9 FOXA3 SCRT2 RARA ZNF7 NADSYN1 DHCR7 ENSG00000254682 FLJ42102
GH11F071431 0.5 ENCODE 0.4 -7.8 -7807 0.2 PKNOX1 CEBPA ZBTB33 ENSG00000254682 FLJ42102
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ42102 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ42102 Gene

71,382,601 bp from pter
71,423,423 bp from pter
40,823 bases
Minus strand

Genomic View for FLJ42102 Gene

Genes around FLJ42102 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42102 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42102 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42102 Gene

Proteins for FLJ42102 Gene

Post-translational modifications for FLJ42102 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42102 Gene

Domains & Families for FLJ42102 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42102 Gene

Function for FLJ42102 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42102 Gene

Localization for FLJ42102 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ42102 Gene

Pathways & Interactions for FLJ42102 Gene

SuperPathways for FLJ42102 Gene

No Data Available

Interacting Proteins for FLJ42102 Gene

Gene Ontology (GO) - Biological Process for FLJ42102 Gene


No data available for Pathways by source and SIGNOR curated interactions for FLJ42102 Gene

Transcripts for FLJ42102 Gene

mRNA/cDNA for FLJ42102 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42102 Gene

Uncharacterized LOC399923:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42102 Gene

No ASD Table

Relevant External Links for FLJ42102 Gene

GeneLoc Exon Structure for

Expression for FLJ42102 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ42102 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ42102 Gene

This gene is overexpressed in Testis (x20.8).

SOURCE GeneReport for Unigene cluster for FLJ42102 Gene:

genes like me logo Genes that share expression patterns with FLJ42102: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ42102 Gene

Orthologs for FLJ42102 Gene

Evolution for FLJ42102 Gene

Gene Tree for FLJ42102 (if available)
Gene Tree for FLJ42102 (if available)

No data available for Orthologs for FLJ42102 Gene

Paralogs for FLJ42102 Gene

No data available for Paralogs for FLJ42102 Gene

Variants for FLJ42102 Gene

Sequence variations from dbSNP and Humsavar for FLJ42102 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10664294 -- 71,415,212(+) TGGAT(-/GATG/GGAT/GGATGGAT)ACATA intron-variant
rs10792680 -- 71,405,506(+) GTGTC(C/T)TTCTA downstream-variant-500B
rs10898091 -- 71,405,984(+) CACCT(C/T)GGCCT nc-transcript-variant
rs10898098 -- 71,414,550(+) AGAGA(A/G)AGAGA intron-variant
rs10898099 -- 71,414,561(+) GAGAG(A/C)GAGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42102 Gene

Variant ID Type Subtype PubMed ID
dgv74n21 CNV loss 19592680
esv2660921 CNV deletion 23128226
esv2744747 CNV deletion 23290073
esv3626776 CNV loss 21293372
nsv832202 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ42102 Gene

Disorders for FLJ42102 Gene

Relevant External Links for FLJ42102

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for FLJ42102 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ42102 Gene

Publications for FLJ42102 Gene

No publications were found for FLJ42102 Gene.

Products for FLJ42102 Gene

Sources for FLJ42102 Gene

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