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Aliases for FLJ42102 Gene

Subcategory (RNA class) for FLJ42102 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ42102 Gene

  • Uncharacterized LOC399923 3 5

External Ids for FLJ42102 Gene

Previous GeneCards Identifiers for FLJ42102 Gene

  • GC11M070843
  • GC11M070794
  • GC11U901356
  • GC11M071096

Summaries for FLJ42102 Gene

GeneCards Summary for FLJ42102 Gene

FLJ42102 (Uncharacterized LOC399923) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ42102 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ42102 Gene

Genomics for FLJ42102 Gene

Regulatory Elements for FLJ42102 Gene

Enhancers for FLJ42102 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H071418 0.9 ENCODE dbSUPER 0.7 +4.7 4740 1 PKNOX1 NR2F1 DPF2 BCL11A IKZF1 EED IKZF2 RUNX3 NADSYN1 ENSG00000254682 DHCR7 FLJ42102 SHANK2
GH11H071432 1.4 Ensembl ENCODE dbSUPER 0.4 -10.2 -10177 4 ELF3 FOXA2 PKNOX1 ARID4B RARA YY1 SLC30A9 CREM PAF1 SMARCC1 NADSYN1 ENSG00000254682 FLJ42102
GH11H071420 0.7 ENCODE 0.7 +2.8 2814 0 CTCF ZNF654 TRIM22 REST RAD21 GATA3 IKZF1 ZNF143 SMC3 HNF4A FLJ42102 SHANK2
GH11H071421 0.5 dbSUPER 0.7 +2.1 2141 0 CTCF IKZF1 HNF4A IKZF2 ZKSCAN1 NADSYN1 ENSG00000254682 DHCR7 KRTAP5-8 FLJ42102 SHANK2
GH11H071431 0.8 ENCODE dbSUPER 0.4 -7.8 -7807 0 PKNOX1 RFX1 CEBPA CEBPB ZBTB33 ENSG00000254682 FLJ42102
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ42102 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ42102 Gene

Chromosome:
11
Start:
71,382,601 bp from pter
End:
71,423,423 bp from pter
Size:
40,823 bases
Orientation:
Minus strand

Genomic View for FLJ42102 Gene

Genes around FLJ42102 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ42102 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ42102 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ42102 Gene

Proteins for FLJ42102 Gene

Post-translational modifications for FLJ42102 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ42102 Gene

Domains & Families for FLJ42102 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ42102 Gene

Function for FLJ42102 Gene

Phenotypes From GWAS Catalog for FLJ42102 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ42102 Gene

Localization for FLJ42102 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ42102 Gene

Pathways & Interactions for FLJ42102 Gene

SuperPathways for FLJ42102 Gene

No Data Available

Interacting Proteins for FLJ42102 Gene

Gene Ontology (GO) - Biological Process for FLJ42102 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ42102 Gene

Drugs & Compounds for FLJ42102 Gene

No Compound Related Data Available

Transcripts for FLJ42102 Gene

mRNA/cDNA for FLJ42102 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ42102 Gene

Uncharacterized LOC399923:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ42102 Gene

No ASD Table

Relevant External Links for FLJ42102 Gene

GeneLoc Exon Structure for
FLJ42102

Expression for FLJ42102 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ42102 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ42102 Gene

This gene is overexpressed in Testis (x20.8).

SOURCE GeneReport for Unigene cluster for FLJ42102 Gene:

Hs.128191
genes like me logo Genes that share expression patterns with FLJ42102: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ42102 Gene

Orthologs for FLJ42102 Gene

Evolution for FLJ42102 Gene

ENSEMBL:
Gene Tree for FLJ42102 (if available)
TreeFam:
Gene Tree for FLJ42102 (if available)

No data available for Orthologs for FLJ42102 Gene

Paralogs for FLJ42102 Gene

No data available for Paralogs for FLJ42102 Gene

Variants for FLJ42102 Gene

Sequence variations from dbSNP and Humsavar for FLJ42102 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000095686 -- 71,419,562(+) CCACC(C/T)CAGCC intron-variant
rs1000122583 -- 71,415,164(+) GATGG(A/G)TGGTA intron-variant
rs1000180587 -- 71,424,225(+) GACAC(A/G)GGGCA upstream-variant-2KB
rs1000271132 -- 71,407,875(+) CATAG(C/T)GCCCA intron-variant
rs1000480246 -- 71,412,473(+) CCCCA(C/G)AGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ42102 Gene

Variant ID Type Subtype PubMed ID
dgv74n21 CNV loss 19592680
esv2660921 CNV deletion 23128226
esv2744747 CNV deletion 23290073
esv3626776 CNV loss 21293372
nsv832202 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ42102 Gene

Disorders for FLJ42102 Gene

Relevant External Links for FLJ42102

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ42102

No disorders were found for FLJ42102 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ42102 Gene

Publications for FLJ42102 Gene

No publications were found for FLJ42102 Gene.

Products for FLJ42102 Gene

Sources for FLJ42102 Gene

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