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Aliases for FLJ41278 Gene

Subcategory (RNA class) for FLJ41278 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ41278 Gene

  • Uncharacterized LOC400046 3
  • RP11-766N7.3 5

External Ids for FLJ41278 Gene

Previous GeneCards Identifiers for FLJ41278 Gene

  • GC12P063559
  • GC12U901286
  • GC12P065277

Summaries for FLJ41278 Gene

GeneCards Summary for FLJ41278 Gene

FLJ41278 (Uncharacterized LOC400046) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ41278 Gene

Genomics for FLJ41278 Gene

Regulatory Elements for FLJ41278 Gene

Enhancers for FLJ41278 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F064882 0.7 ENCODE 8.2 -0.2 -152 1.2 CTCF PKNOX1 JUNB RAD21 ZBTB40 RELA ZNF664 SP1 POLR2A IKZF1 RNU6-166P FLJ41278 WIF1 RPL7P39
GH12F064943 0.5 ENCODE 8.3 +60.6 60590 1.6 SMARCA4 RNF2 SCRT2 HLF WIF1 FLJ41278 RNU6ATAC42P ENSG00000248995
GH12F064895 0.6 ENCODE 6.9 +12.3 12268 1.1 GATA3 ZNF146 JUNB CUX1 FOS GABPA WIF1 RNU6-166P RNU6ATAC42P FLJ41278 GC12P064940
GH12F064889 0.8 ENCODE 0.4 +6.5 6535 0.4 ESRRA PKNOX1 JUN SIN3A GATA3 CTBP1 ELK1 RCOR1 FOS TCF7L2 RNU6-166P FLJ41278 GC12P064940
GH12F064893 0.7 ENCODE 0.4 +11.0 11041 1.0 HLF INSM2 JUNB TSHZ1 ZEB2 GABPA ZNF101 SCRT2 PRDM10 FOS RNU6-166P FLJ41278 GC12P064940
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ41278 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ41278 Gene

Chromosome:
12
Start:
64,883,394 bp from pter
End:
64,977,522 bp from pter
Size:
94,129 bases
Orientation:
Plus strand

Genomic View for FLJ41278 Gene

Genes around FLJ41278 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ41278 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ41278 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ41278 Gene

Proteins for FLJ41278 Gene

Post-translational modifications for FLJ41278 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ41278 Gene

Domains & Families for FLJ41278 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ41278 Gene

Function for FLJ41278 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ41278 Gene

Localization for FLJ41278 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ41278 Gene

Pathways & Interactions for FLJ41278 Gene

SuperPathways for FLJ41278 Gene

No Data Available

Interacting Proteins for FLJ41278 Gene

Gene Ontology (GO) - Biological Process for FLJ41278 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ41278 Gene

Transcripts for FLJ41278 Gene

mRNA/cDNA for FLJ41278 Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ41278 Gene

Uncharacterized LOC400046:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ41278 Gene

No ASD Table

Relevant External Links for FLJ41278 Gene

GeneLoc Exon Structure for
FLJ41278

Expression for FLJ41278 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ41278 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ41278 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x6.9), Brain - Hippocampus (x5.2), Brain - Anterior cingulate cortex (BA24) (x4.9), Brain - Cortex (x4.8), Brain - Putamen (basal ganglia) (x4.1), and Brain - Nucleus accumbens (basal ganglia) (x4.0).

SOURCE GeneReport for Unigene cluster for FLJ41278 Gene:

Hs.591032
genes like me logo Genes that share expression patterns with FLJ41278: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ41278 Gene

Orthologs for FLJ41278 Gene

Evolution for FLJ41278 Gene

ENSEMBL:
Gene Tree for FLJ41278 (if available)
TreeFam:
Gene Tree for FLJ41278 (if available)

No data available for Orthologs for FLJ41278 Gene

Paralogs for FLJ41278 Gene

No data available for Paralogs for FLJ41278 Gene

Variants for FLJ41278 Gene

Sequence variations from dbSNP and Humsavar for FLJ41278 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1035630 -- 64,947,277(+) CGAAG(C/T)CAAAT intron-variant
rs10467074 -- 64,924,589(+) gtgca(A/G)tggca intron-variant
rs10588402 -- 64,976,665(+) TAACA(-/TATAACA)GCTAT nc-transcript-variant
rs10679968 -- 64,898,477(+) TTGAA(-/CTT/TCTT)TCTTA intron-variant
rs10748012 -- 64,929,847(+) TGTGC(A/G)TGTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ41278 Gene

Variant ID Type Subtype PubMed ID
nsv748 CNV insertion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ41278 Gene

Disorders for FLJ41278 Gene

Relevant External Links for FLJ41278

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ41278

No disorders were found for FLJ41278 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ41278 Gene

Publications for FLJ41278 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FLJ41278 Gene

Sources for FLJ41278 Gene

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