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Aliases for FLJ40288 Gene

Subcategory (RNA class) for FLJ40288 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ40288 Gene

  • Uncharacterized FLJ40288 3 5

External Ids for FLJ40288 Gene

Previous GeneCards Identifiers for FLJ40288 Gene

  • GC07P130686
  • GC07P131735
  • GC07P131749
  • GC07P131790
  • GC07P131984
  • GC07P132060
  • GC07U902640
  • GC07P132335

Summaries for FLJ40288 Gene

GeneCards Summary for FLJ40288 Gene

FLJ40288 (Uncharacterized FLJ40288) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ40288 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ40288 Gene

Genomics for FLJ40288 Gene

GeneHancer (GH) Regulatory Elements for FLJ40288 Gene

Promoters and enhancers for FLJ40288 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I132650 Enhancer 0.5 ENCODE 550.8 +1.9 1873 0.1 ZNF217 CTBP1 RXRA SIN3A DPF2 MNT REST PLXNA4 FLJ40288 GC07P132660
GH07I132614 Enhancer 0.7 Ensembl ENCODE 11.9 -33.8 -33785 1.2 CTCF IKZF1 SIN3A EZH2 FLJ40288 PLXNA4 GC07P132609
GH07I132580 Enhancer 0.7 ENCODE 10.6 -67.9 -67887 0.2 CTCF RB1 ZNF2 RAD21 CC2D1A ZNF121 ZNF335 ARID2 ZNF143 SMC3 PLXNA4 FLJ40288 GC07P132609 GC07P132551
GH07I132739 Enhancer 0.6 ENCODE 10.6 +91.0 90953 0.2 ZBTB21 JUN CEBPB ZEB2 SP1 JUND ATF3 POLR2A FOSL2 ZNF600 FLJ40288 PLXNA4 GC07P132754 GC07P132660
GH07I132738 Enhancer 0.5 ENCODE 10.6 +89.7 89673 0.2 JUND POLR2A USF2 MAX FOSL2 FOS LOC100506937 PLXNA4 FLJ40288 GC07P132754 GC07P132660
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ40288 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FLJ40288 Gene

Genomic Locations for FLJ40288 Gene
chr7:132,648,794-132,728,769
(GRCh38/hg38)
Size:
79,976 bases
Orientation:
Plus strand
chr7:132,333,553-132,413,528
(GRCh37/hg19)

Genomic View for FLJ40288 Gene

Genes around FLJ40288 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ40288 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ40288 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ40288 Gene

Proteins for FLJ40288 Gene

Post-translational modifications for FLJ40288 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ40288 Gene

Domains & Families for FLJ40288 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ40288 Gene

Function for FLJ40288 Gene

genes like me logo Genes that share phenotypes with FLJ40288: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ40288 Gene

Localization for FLJ40288 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ40288 Gene

Pathways & Interactions for FLJ40288 Gene

SuperPathways for FLJ40288 Gene

No Data Available

Interacting Proteins for FLJ40288 Gene

Gene Ontology (GO) - Biological Process for FLJ40288 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ40288 Gene

Drugs & Compounds for FLJ40288 Gene

No Compound Related Data Available

Transcripts for FLJ40288 Gene

mRNA/cDNA for FLJ40288 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ40288 Gene

Uncharacterized FLJ40288:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ40288 Gene

No ASD Table

Relevant External Links for FLJ40288 Gene

GeneLoc Exon Structure for
FLJ40288

Expression for FLJ40288 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ40288 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ40288 Gene

This gene is overexpressed in Testis (x50.5).

SOURCE GeneReport for Unigene cluster for FLJ40288 Gene:

Hs.671875
genes like me logo Genes that share expression patterns with FLJ40288: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ40288 Gene

Orthologs for FLJ40288 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FLJ40288 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
OneToOne
Species where no ortholog for FLJ40288 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FLJ40288 Gene

ENSEMBL:
Gene Tree for FLJ40288 (if available)
TreeFam:
Gene Tree for FLJ40288 (if available)

Paralogs for FLJ40288 Gene

No data available for Paralogs for FLJ40288 Gene

Variants for FLJ40288 Gene

Sequence variations from dbSNP and Humsavar for FLJ40288 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000059624 -- 132,658,147(+) T/C intron_variant
rs1000080015 -- 132,709,898(+) G/A intron_variant
rs1000091636 -- 132,657,900(+) G/A intron_variant
rs1000094057 -- 132,699,575(+) C/A intron_variant
rs1000227842 -- 132,664,100(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ40288 Gene

Variant ID Type Subtype PubMed ID
esv1009261 CNV deletion 20482838
esv1465275 CNV insertion 17803354
esv2759564 CNV gain 17122850
esv3615056 CNV gain 21293372
esv3615057 CNV loss 21293372
nsv1032205 CNV gain 25217958
nsv831140 CNV loss 17160897
nsv831141 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ40288 Gene

Disorders for FLJ40288 Gene

Additional Disease Information for FLJ40288

No disorders were found for FLJ40288 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ40288 Gene

Publications for FLJ40288 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for FLJ40288 Gene

Sources for FLJ40288 Gene

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