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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FLJ40288 Gene

protein-coding   GIFtS: 26
GCID: GC07P132335

Uncharacterized FLJ40288


  Search for FLJ40288
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 7

Aliases
Uncharacterized FLJ402882

External Ids:    Entrez Gene: 2860232   Ensembl: ENSG000001834707   UniProtKB: A4D1N53   
ORGUL members:         
NONCODE14:n370092 n369853 n369854 n369522      

Export aliases for FLJ40288 gene to outside databases

Previous GC identifers: GC07P130686 GC07P131735 GC07P131749 GC07P131790 GC07P131984 GC07P132060 GC07U902640


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for FLJ40288 Gene: 
FLJ40288 is a protein-coding gene, and is affiliated with the lncRNA class.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000007.13  NT_007933.15  NC_018918.2  NT_079596.2  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for FLJ40288
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for FLJ40288

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FLJ40288


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q32.3   Ensembl cytogenetic band:  7q32.3   

FLJ40288 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FLJ40288 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P132335:  view genomic region     (about GC identifiers)

Start:
132,333,553 bp from pter      End:
132,413,528 bp from pter
Size:
79,976 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 131,683,777-131,696,541     
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for FLJ40288

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: YG018_HUMAN, A4D1N5 (See protein sequence)
Recommended Name: Putative uncharacterized protein FLJ40288  
Size: 150 amino acids; 16741 Da
Secondary accessions: Q8N7V8

Explore the universe of human proteins at neXtProt for FLJ40288: NX_A4D1N5

Explore proteomics data for FLJ40288 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_A4D1N5

  • FLJ40288 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    FLJ40288 Protein Expression

    ENSEMBL proteins: 
     ENSP00000331939  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: A4D1N5


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FLJ40288

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FLJ40288 (YG018)

    Search CenterWatch for drugs/clinical trials and news about FLJ40288 / YG018

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    About This Section

    REFSEQ mRNAs for FLJ40288 gene: 
    NM_173682.1  

    Unigene Cluster for FLJ40288:

    Uncharacterized FLJ40288
    Hs.671875  [show with all ESTs]
    Unigene Representative Sequence: AK097607
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000332558(uc003vrd.1) ENST00000573229
    miRNA
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    Additional mRNA sequence: 

    AK097607.1 NR_046323.1 

    2 DOTS entries:

    DT.70103027  DT.100008265 

    9 AceView cDNA sequences:

    AW134826 AW593734 AK097607 AI962442 AW590021 NM_173682 BE465933 AI026959 
    AI952741 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FLJ40288 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTCACTTGGG
    FLJ40288 Expression
    About this image


    See FLJ40288 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for FLJ40288

    SOURCE GeneReport for Unigene cluster: Hs.671875
        SABiosciences Custom PCR Arrays for FLJ40288
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FLJ40288

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and chimp.

    Orthologs for FLJ40288 gene from 1 species (see representative species )    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chimpanzee
    (Pan troglodytes)
    Mammalia --
    --
    99(a)
    1 ↔ 1
    7(134217991-134220841)


    ENSEMBL Gene Tree for FLJ40288 (if available)
    TreeFam Gene Tree for FLJ40288 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1585 SNPs in FLJ40288 are shown (see all 1585)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs573893481,2
    C--126716603(+) TTTTT-/TT/TTT
            
    AAGAA
    1 -- int11NA 2
    rs1386767661,2
    C--132335584(+) TTGGCA/GTAGTC 1 -- int10--------
    rs745239561,2
    C,F--132335593(+) TCTACT/CTGATG 1 -- int12Minor allele frequency- C:0.05CSA WA 120
    rs1124518701,2
    C,F--132335615(+) AACAAG/ACATCA 1 -- int11Minor allele frequency- A:0.50NA 2
    rs1827818151,2
    --132335795(+) GAAGTA/GGCTTT 1 -- int10--------
    rs1871082811,2
    --132335872(+) TATTCC/TACTGG 1 -- int10--------
    rs1929840331,2
    --132335878(+) ACTGGA/CTATCC 1 -- int10--------
    rs20329461,2
    C,F--132335886(+) TCCCAA/GTGGGA 1 -- int18Minor allele frequency- G:0.24NA EA WA CSA 494
    rs1852843181,2
    C--132335966(+) TAAATA/CCAAAA 1 -- int10--------
    rs1426717741,2
    C--132335989(+) TAAAAA/CATTTA 1 -- int10--------

    HapMap Linkage Disequilibrium report for FLJ40288 (132333553 - 132413528 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for FLJ40288: --
    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing FLJ40288
    DNA2.0 Custom Variant and Variant Library Synthesis for FLJ40288

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FLJ40288 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with FLJ40288)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)2 Scherer S.W.... Tsui L.-C. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 286023 AceView: FLJ40288 Ensembl:ENSG00000183470 euGenes: HUgn286023

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FLJ40288 gene:
    Search GeneIP for patents involving FLJ40288

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

     
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