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Aliases for FLJ40194 Gene

Subcategory (RNA class) for FLJ40194 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ40194 Gene

  • Uncharacterized FLJ40194 3

External Ids for FLJ40194 Gene

ORGUL Members for FLJ40194 Gene

Summaries for FLJ40194 Gene

GeneCards Summary for FLJ40194 Gene

FLJ40194 (Uncharacterized FLJ40194) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ40194 Gene

Genomics for FLJ40194 Gene

Genomic Location for FLJ40194 Gene

Start:
49,248,239 bp from pter
End:
49,258,665 bp from pter
Size:
10,427 bases
Orientation:
Plus strand

Genomic View for FLJ40194 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FLJ40194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ40194 Gene

Regulatory Elements for FLJ40194 Gene

Proteins for FLJ40194 Gene

  • Protein details for FLJ40194 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q8N7Z3-Q8N7Z3
    Recommended name:
    FLJ40194 protein
    Protein Accession:
    Q8N7Z3
    Secondary Accessions:

    Protein attributes for FLJ40194 Gene

    Size:
    131 amino acids
    Molecular mass:
    14427 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FLJ40194 Gene

Proteomics data for FLJ40194 Gene at MOPED

Post-translational modifications for FLJ40194 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ40194 Gene

Domains for FLJ40194 Gene

Protein Domains for FLJ40194 Gene

ProtoNet:
genes like me logo Genes that share domains with FLJ40194: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FLJ40194 Gene

Function for FLJ40194 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FLJ40194 Gene

Localization for FLJ40194 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FLJ40194 Gene COMPARTMENTS Subcellular localization image for FLJ40194 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 2

No data available for Gene Ontology (GO) - Cellular Components for FLJ40194 Gene

Pathways for FLJ40194 Gene

SuperPathways for FLJ40194 Gene

No Data Available

Interacting Proteins for FLJ40194 Gene

Gene Ontology (GO) - Biological Process for FLJ40194 Gene

None

No data available for Pathways by source for FLJ40194 Gene

Transcripts for FLJ40194 Gene

mRNA/cDNA for FLJ40194 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ40194 Gene

Uncharacterized FLJ40194:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ40194 Gene

No ASD Table

Relevant External Links for FLJ40194 Gene

GeneLoc Exon Structure for
FLJ40194

Expression for FLJ40194 Gene

mRNA expression in normal human tissues for FLJ40194 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ40194 Gene

This gene is overexpressed in Testis (46.8).

SOURCE GeneReport for Unigene cluster for FLJ40194 Gene Hs.446890

genes like me logo Genes that share expressions with FLJ40194: view

Orthologs for FLJ40194 Gene

Evolution for FLJ40194 Gene

ENSEMBL:
Gene Tree for FLJ40194 (if available)
TreeFam:
Gene Tree for FLJ40194 (if available)

No data available for Orthologs for FLJ40194 Gene

Paralogs for FLJ40194 Gene

No data available for Paralogs for FLJ40194 Gene

Variants for FLJ40194 Gene

Sequence variations from dbSNP and Humsavar for FLJ40194 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs72699 -- 49,251,528(-) gggag(C/G)ctgag intron-variant
rs596783 -- 49,252,343(-) CTGGT(A/G)TCGCC nc-transcript-variant
rs598905 -- 49,251,933(-) cgaca(C/G)agcca intron-variant
rs600271 -- 49,251,619(-) taaca(A/C)ggtga intron-variant
rs600284 -- 49,251,603(-) catct(C/T)tacta intron-variant

Relevant External Links for FLJ40194 Gene

HapMap Linkage Disequilibrium report
FLJ40194

No data available for Structural Variations from Database of Genomic Variants (DGV) for FLJ40194 Gene

Disorders for FLJ40194 Gene

No disorders were found for FLJ40194 Gene.

No data available for UniProtKB/Swiss-Prot for FLJ40194 Gene

Publications for FLJ40194 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3

Products for FLJ40194 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FLJ40194
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FLJ40194
    • Block miRNA regulation of FLJ40194 using miScript Target Protectors

    Sources for FLJ40194 Gene

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