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Aliases for FLJ38576 Gene

Subcategory (RNA class) for FLJ38576 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ38576 Gene

  • Uncharacterized LOC651430 3 5

External Ids for FLJ38576 Gene

ORGUL Members for FLJ38576 Gene

Previous GeneCards Identifiers for FLJ38576 Gene

  • GC04M187346
  • GC04M187110
  • GC04M182862
  • GC04U901459

Summaries for FLJ38576 Gene

GeneCards Summary for FLJ38576 Gene

FLJ38576 (Uncharacterized LOC651430) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ38576 Gene

Genomics for FLJ38576 Gene

Regulatory Elements for FLJ38576 Gene

Enhancers for FLJ38576 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G186201 1.3 Ensembl ENCODE dbSUPER 0.4 -10.6 -10550 0.9 SIN3A DMAP1 RAD21 YY1 EGR1 ZNF143 CREM EGR2 ZNF654 MXD4 CYP4V2 KLKB1 FLJ38576
GH04G186203 1.1 ENCODE dbSUPER 0.4 -13.2 -13239 3.2 CBX3 ATF1 TBL1XR1 CREB3L1 TCF12 EGR1 ZNF366 SCRT2 CREM EGR2 CYP4V2 KLKB1 FLJ38576
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ38576 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ38576 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000177135 -210 2601 HNRNPUL1 CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 KLF13 MXD4

Genomic Location for FLJ38576 Gene

Chromosome:
4
Start:
186,189,032 bp from pter
End:
186,191,490 bp from pter
Size:
2,459 bases
Orientation:
Minus strand

Genomic View for FLJ38576 Gene

Genes around FLJ38576 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ38576 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ38576 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ38576 Gene

Proteins for FLJ38576 Gene

Post-translational modifications for FLJ38576 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ38576 Gene

Domains & Families for FLJ38576 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ38576 Gene

Function for FLJ38576 Gene

Phenotypes for FLJ38576 Gene

GenomeRNAi human phenotypes for FLJ38576:
genes like me logo Genes that share phenotypes with FLJ38576: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ38576 Gene

Localization for FLJ38576 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ38576 Gene

Pathways & Interactions for FLJ38576 Gene

SuperPathways for FLJ38576 Gene

No Data Available

Interacting Proteins for FLJ38576 Gene

Gene Ontology (GO) - Biological Process for FLJ38576 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ38576 Gene

Transcripts for FLJ38576 Gene

mRNA/cDNA for FLJ38576 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ38576 Gene

Uncharacterized LOC651430:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ38576 Gene

No ASD Table

Relevant External Links for FLJ38576 Gene

GeneLoc Exon Structure for
FLJ38576

Expression for FLJ38576 Gene

SOURCE GeneReport for Unigene cluster for FLJ38576 Gene:

Hs.727796
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ38576 Gene

Orthologs for FLJ38576 Gene

Evolution for FLJ38576 Gene

ENSEMBL:
Gene Tree for FLJ38576 (if available)
TreeFam:
Gene Tree for FLJ38576 (if available)

No data available for Orthologs for FLJ38576 Gene

Paralogs for FLJ38576 Gene

No data available for Paralogs for FLJ38576 Gene

Variants for FLJ38576 Gene

Sequence variations from dbSNP and Humsavar for FLJ38576 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs119103282 Pathogenic 186,191,953(+) GGAAA(A/C/T)GGCAG upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs119103285 Pathogenic 186,192,004(+) TGGTG(A/G)GCCAC upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs200054565 Likely benign 186,191,694(+) CCGGG(-/C)GACCC upstream-variant-2KB, utr-variant-5-prime
rs531909464 Likely benign 186,191,696(+) GGGCG(A/G)CCCCG upstream-variant-2KB, utr-variant-5-prime
rs202148693 Uncertain significance 186,191,847(+) GGGCT(C/T)GTGTG upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for FLJ38576 Gene

Variant ID Type Subtype PubMed ID
dgv1052e214 CNV gain 21293372
dgv683n27 CNV gain 19166990
dgv9426n54 CNV gain 21841781
esv27795 CNV gain 19812545
esv3603517 CNV gain 21293372
esv3603523 CNV gain 21293372
esv3894090 CNV gain 25118596
nsv1028146 CNV gain 25217958
nsv461864 CNV gain 19166990
nsv4642 CNV deletion 18451855
nsv4644 CNV insertion 18451855
nsv470097 CNV gain 18288195
nsv508340 CNV deletion 20534489
nsv596392 CNV gain 21841781
nsv596401 CNV loss 21841781
nsv830172 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ38576 Gene

Disorders for FLJ38576 Gene

Relevant External Links for FLJ38576

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ38576

No disorders were found for FLJ38576 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ38576 Gene

Publications for FLJ38576 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FLJ38576 Gene

Sources for FLJ38576 Gene

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