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Aliases for FLJ37453 Gene

Subcategory (RNA class) for FLJ37453 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ37453 Gene

  • Uncharacterized LOC729614 3 5

External Ids for FLJ37453 Gene

Previous GeneCards Identifiers for FLJ37453 Gene

  • GC01M016033
  • GC01P016034
  • GC01M016161

Summaries for FLJ37453 Gene

GeneCards Summary for FLJ37453 Gene

FLJ37453 (Uncharacterized LOC729614) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ37453 Gene

Genomics for FLJ37453 Gene

Regulatory Elements for FLJ37453 Gene

Enhancers for FLJ37453 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F015892 1.1 Ensembl ENCODE 23.9 -45.4 -45372 1.9 HDAC1 PKNOX1 RAD21 CHAMP1 YY1 ZNF121 ZBTB11 CEBPB TSHZ1 HDAC8 FLJ37453 SPEN HSPB7 C1orf64 GC01M015910 GC01P015874
GH01F015815 1 Ensembl ENCODE 19.1 +32.4 32446 0.6 ARNT ARID4B ZNF2 RAD21 ZNF366 GATA2 ZNF143 CREM DEK EGR2 HSPB7 FLJ37453 SPEN ENSG00000233078 CLCNKA UQCRHL RPS16P1
GH01F015825 0.7 Ensembl ENCODE 18.8 +22.0 22047 1.4 TFAP4 KLF1 SAP130 SIN3A ZNF384 ZIC2 TEAD3 ZNF335 FOSL1 PATZ1 CLCNKA FLJ37453 SPEN ENSG00000233078 HSPB7 ARHGEF19 SZRD1 C1orf64 RPS16P1 UQCRHL
GH01F015829 1.3 FANTOM5 Ensembl ENCODE 14.4 +14.1 14147 10.0 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 FAM231A ENSG00000237938 CD24P1 RNU1-1 CLCNKA FLJ37453 SPEN ZBTB17 HSPB7 RPL22P3
GH01F015882 1.1 FANTOM5 Ensembl ENCODE 13.2 -37.2 -37166 5.4 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 DEK SP3 SPEN ENSG00000237938 EIF1AXP1 FBXO42 RPL22P3 RPS16P1 HSPB7 FLJ37453 ENSG00000224621 LINC01772
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FLJ37453 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ37453 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000279589 -553 4201 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for FLJ37453 Gene

Chromosome:
1
Start:
15,834,215 bp from pter
End:
15,848,147 bp from pter
Size:
13,933 bases
Orientation:
Minus strand

Genomic View for FLJ37453 Gene

Genes around FLJ37453 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ37453 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ37453 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ37453 Gene

Proteins for FLJ37453 Gene

Post-translational modifications for FLJ37453 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ37453 Gene

Domains & Families for FLJ37453 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ37453 Gene

Function for FLJ37453 Gene

Phenotypes for FLJ37453 Gene

GenomeRNAi human phenotypes for FLJ37453:
genes like me logo Genes that share phenotypes with FLJ37453: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ37453 Gene

Localization for FLJ37453 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ37453 Gene

Pathways & Interactions for FLJ37453 Gene

SuperPathways for FLJ37453 Gene

No Data Available

Interacting Proteins for FLJ37453 Gene

Gene Ontology (GO) - Biological Process for FLJ37453 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ37453 Gene

Transcripts for FLJ37453 Gene

mRNA/cDNA for FLJ37453 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ37453 Gene

Uncharacterized LOC729614:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ37453 Gene

No ASD Table

Relevant External Links for FLJ37453 Gene

GeneLoc Exon Structure for
FLJ37453

Expression for FLJ37453 Gene

mRNA expression in normal human tissues for FLJ37453 Gene

SOURCE GeneReport for Unigene cluster for FLJ37453 Gene:

Hs.119298
genes like me logo Genes that share expression patterns with FLJ37453: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ37453 Gene

Orthologs for FLJ37453 Gene

Evolution for FLJ37453 Gene

ENSEMBL:
Gene Tree for FLJ37453 (if available)
TreeFam:
Gene Tree for FLJ37453 (if available)

No data available for Orthologs for FLJ37453 Gene

Paralogs for FLJ37453 Gene

No data available for Paralogs for FLJ37453 Gene

Variants for FLJ37453 Gene

Sequence variations from dbSNP and Humsavar for FLJ37453 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1002165 -- 15,838,292(-) TGCTG(C/T)TCCTC intron-variant
rs1047596 -- 15,835,572(-) AGCAC(G/T)GGGAG nc-transcript-variant
rs1047597 -- 15,835,559(-) GGCAG(C/G)GGGTA nc-transcript-variant
rs10737911 -- 15,841,360(+) TAAAC(C/T)GCATT intron-variant
rs10927863 -- 15,838,752(+) ACGTT(A/C)TGCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ37453 Gene

Variant ID Type Subtype PubMed ID
dgv154n54 CNV loss 21841781
dgv37n100 CNV gain 25217958
dgv38n100 CNV gain 25217958
esv2764241 CNV loss 21179565
nsv1011969 CNV gain+loss 25217958
nsv1012917 CNV loss 25217958
nsv3409 CNV deletion 18451855
nsv511126 CNV loss 21212237
nsv524044 CNV loss 19592680
nsv545619 CNV loss 21841781
nsv833647 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ37453 Gene

Disorders for FLJ37453 Gene

Relevant External Links for FLJ37453

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ37453

No disorders were found for FLJ37453 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ37453 Gene

Publications for FLJ37453 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for FLJ37453 Gene

Sources for FLJ37453 Gene

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