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Aliases for FLJ33534 Gene

Subcategory (RNA class) for FLJ33534 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ33534 Gene

  • Uncharacterized LOC285150 3
  • AC062028.1 5

External Ids for FLJ33534 Gene

Previous GeneCards Identifiers for FLJ33534 Gene

  • GC02M011244
  • GC02M011260
  • GC02M011189
  • GC02U902008
  • GC02M011242

Summaries for FLJ33534 Gene

GeneCards Summary for FLJ33534 Gene

FLJ33534 (Uncharacterized LOC285150) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ33534 Gene

Genomics for FLJ33534 Gene

Regulatory Elements for FLJ33534 Gene

Enhancers for FLJ33534 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F011128 1.6 FANTOM5 Ensembl ENCODE 0.8 +3.1 3121 3.0 ZFP64 ARID4B DMAP1 ZNF48 ETS1 SLC30A9 GLIS2 SP3 SP5 NFYC PQLC3 C2orf50 KCNF1 FLJ33534 GC02P011102
GH02F011124 0.8 ENCODE 0.4 +8.1 8132 0.2 BCOR CTCF ZNF48 RAD21 TEAD3 YY1 ADNP ZNF143 SMC3 CREM PQLC3 FLJ33534 GC02P011102
GH02F011122 0.8 ENCODE 0.4 +10.3 10312 0.2 KLF1 ESRRA JUN DDX20 ETV1 ZNF175 BACH1 PYGO2 ZKSCAN1 GATA3 FLJ33534 GC02P011102
GH02F011103 0.7 ENCODE 0.3 +28.6 28628 2.0 ZFP64 ZNF121 ZNF316 GATA3 FOS CREM MAFK NFIA TEAD1 HCFC1 RRM2 GC02P011102 FLJ33534
GH02F011112 0.5 FANTOM5 0.3 +19.8 19780 0.2 ZNF366 ZNF512 YBX1 ETV6 GC02P011102 FLJ33534
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ33534 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ33534 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000585235 -280 1400 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF143 KLF13

Genomic Location for FLJ33534 Gene

Chromosome:
2
Start:
11,099,851 bp from pter
End:
11,132,821 bp from pter
Size:
32,971 bases
Orientation:
Minus strand

Genomic View for FLJ33534 Gene

Genes around FLJ33534 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ33534 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ33534 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ33534 Gene

Proteins for FLJ33534 Gene

Post-translational modifications for FLJ33534 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ33534 Gene

Domains & Families for FLJ33534 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ33534 Gene

Function for FLJ33534 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ33534 Gene

Localization for FLJ33534 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ33534 Gene

Pathways & Interactions for FLJ33534 Gene

SuperPathways for FLJ33534 Gene

No Data Available

Interacting Proteins for FLJ33534 Gene

Gene Ontology (GO) - Biological Process for FLJ33534 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ33534 Gene

Transcripts for FLJ33534 Gene

mRNA/cDNA for FLJ33534 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ33534 Gene

Uncharacterized LOC285150:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ33534 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8
SP1: - - - - - - -
SP2: - - -
SP3: - - - - - -
SP4: -
SP5:

Relevant External Links for FLJ33534 Gene

GeneLoc Exon Structure for
FLJ33534

Expression for FLJ33534 Gene

SOURCE GeneReport for Unigene cluster for FLJ33534 Gene:

Hs.329841
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ33534 Gene

Orthologs for FLJ33534 Gene

Evolution for FLJ33534 Gene

ENSEMBL:
Gene Tree for FLJ33534 (if available)
TreeFam:
Gene Tree for FLJ33534 (if available)

No data available for Orthologs for FLJ33534 Gene

Paralogs for FLJ33534 Gene

No data available for Paralogs for FLJ33534 Gene

Variants for FLJ33534 Gene

Sequence variations from dbSNP and Humsavar for FLJ33534 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10166997 -- 11,129,925(+) CCTCG(C/G)GCTCC intron-variant
rs10167190 -- 11,130,080(+) CATCG(C/G)AGGTG intron-variant
rs10167253 -- 11,110,372(+) CAGAA(C/T)ACAAA intron-variant
rs10174394 -- 11,112,940(+) aggaa(A/G)gaagg intron-variant
rs10185172 -- 11,112,993(+) acggc(A/G)aggaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ33534 Gene

Variant ID Type Subtype PubMed ID
nsv961380 CNV duplication 23825009
nsv520789 CNV loss 19592680
nsv1125646 CNV deletion 24896259
nsv1111180 CNV tandem duplication 24896259
nsv1110735 CNV insertion 24896259
nsv1072392 CNV deletion 25765185
nsv1069861 CNV deletion 25765185
esv3945 CNV loss 18987735
esv3589812 CNV loss 21293372
esv3552589 CNV deletion 23714750
esv2719670 CNV deletion 23290073
esv2719668 CNV deletion 23290073
esv2719666 CNV deletion 23290073
esv2719665 CNV deletion 23290073
esv2672835 CNV deletion 23128226
esv2658920 CNV deletion 23128226
esv1118036 CNV insertion 17803354
dgv588e201 CNV deletion 23290073
dgv1864n106 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ33534 Gene

Disorders for FLJ33534 Gene

Relevant External Links for FLJ33534

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ33534

No disorders were found for FLJ33534 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ33534 Gene

Publications for FLJ33534 Gene

  1. A novel interaction between the FLJ33534 locus and smoking in obesity: a genome-wide study of 14a88131 Pakistani adults. (PMID: 26278006) Ahmad S. … Saleheen D. (Int J Obes (Lond) 2016) 3 64
  2. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx J.J. … Ophoff R.A. (Mol. Psychiatry 2013) 3 64
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FLJ33534 Gene

Sources for FLJ33534 Gene

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