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Aliases for FLJ30679 Gene

Subcategory (RNA class) for FLJ30679 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ30679 Gene

  • Uncharacterized Protein FLJ30679 3 5

External Ids for FLJ30679 Gene

ORGUL Members for FLJ30679 Gene

Previous GeneCards Identifiers for FLJ30679 Gene

  • GC16P077944
  • GC16P087621
  • GC16P086329
  • GC16P086370
  • GC16U900030
  • GC16P085147
  • GC16P086588

Summaries for FLJ30679 Gene

GeneCards Summary for FLJ30679 Gene

FLJ30679 (Uncharacterized Protein FLJ30679) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ30679 Gene

Genomics for FLJ30679 Gene

Regulatory Elements for FLJ30679 Gene

Enhancers for FLJ30679 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F086554 1.1 ENCODE 0.8 +0.1 75 2.3 HDGF ARID4B SIN3A DMAP1 YBX1 YY1 SLC30A9 ZNF207 ZNF143 SP3 MTHFSD ENSG00000270184 RN7SL381P RNU1-103P ENSG00000270020 FOXL1 FLJ30679 PIR58170
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ30679 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ30679 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000053892 -420 1401 HDGF ARID4B SIN3A DMAP1 YBX1 YY1 SLC30A9 ZNF207 ZNF143 SP3
ENSR00001803732 580 201 HDAC2 TRIM22 MLLT1 ZBTB40

Genomic Location for FLJ30679 Gene

Chromosome:
16
Start:
86,555,320 bp from pter
End:
86,557,299 bp from pter
Size:
1,980 bases
Orientation:
Plus strand

Genomic View for FLJ30679 Gene

Genes around FLJ30679 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ30679 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ30679 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ30679 Gene

Proteins for FLJ30679 Gene

Post-translational modifications for FLJ30679 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ30679 Gene

Domains & Families for FLJ30679 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ30679 Gene

Function for FLJ30679 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ30679 Gene

Localization for FLJ30679 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ30679 Gene

Pathways & Interactions for FLJ30679 Gene

SuperPathways for FLJ30679 Gene

No Data Available

Interacting Proteins for FLJ30679 Gene

Gene Ontology (GO) - Biological Process for FLJ30679 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ30679 Gene

Transcripts for FLJ30679 Gene

mRNA/cDNA for FLJ30679 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ30679 Gene

Uncharacterized protein FLJ30679:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ30679 Gene

No ASD Table

Relevant External Links for FLJ30679 Gene

GeneLoc Exon Structure for
FLJ30679

Expression for FLJ30679 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ30679 Gene

mRNA expression in normal human tissues for FLJ30679 Gene

SOURCE GeneReport for Unigene cluster for FLJ30679 Gene:

Hs.97422
genes like me logo Genes that share expression patterns with FLJ30679: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ30679 Gene

Orthologs for FLJ30679 Gene

Evolution for FLJ30679 Gene

ENSEMBL:
Gene Tree for FLJ30679 (if available)
TreeFam:
Gene Tree for FLJ30679 (if available)

No data available for Orthologs for FLJ30679 Gene

Paralogs for FLJ30679 Gene

No data available for Paralogs for FLJ30679 Gene

Variants for FLJ30679 Gene

Sequence variations from dbSNP and Humsavar for FLJ30679 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs112047523 -- 86,553,645(+) CCACC(A/G)GCGGG intron-variant, upstream-variant-2KB
rs112434798 -- 86,555,012(+) GGTTC(G/T)ACCCG intron-variant, upstream-variant-2KB
rs113867266 -- 86,556,554(+) CCTCA(C/G)TTCTG nc-transcript-variant, upstream-variant-2KB
rs114778854 -- 86,556,368(+) CGCCT(C/T)CTACG nc-transcript-variant, upstream-variant-2KB
rs115642303 -- 86,554,216(+) ACTCT(C/T)TGCTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FLJ30679 Gene

Variant ID Type Subtype PubMed ID
dgv498n67 CNV gain 20364138
esv4262 OTHER complex 18987735
nsv1065605 CNV gain 25217958
nsv483044 CNV gain 15286789
nsv525024 CNV loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ30679 Gene

Disorders for FLJ30679 Gene

Relevant External Links for FLJ30679

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ30679

No disorders were found for FLJ30679 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ30679 Gene

Publications for FLJ30679 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FLJ30679 Gene

Sources for FLJ30679 Gene

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