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Aliases for FLJ27354 Gene

Subcategory (RNA class) for FLJ27354 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ27354 Gene

  • Uncharacterized LOC400761 3 5

External Ids for FLJ27354 Gene

Previous GeneCards Identifiers for FLJ27354 Gene

  • GC01M089803
  • GC01U901377
  • GC01M090049

Summaries for FLJ27354 Gene

GeneCards Summary for FLJ27354 Gene

FLJ27354 (Uncharacterized LOC400761) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ27354 Gene

Genomics for FLJ27354 Gene

Regulatory Elements for FLJ27354 Gene

Enhancers for FLJ27354 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F089603 1.5 FANTOM5 Ensembl ENCODE 17.3 +25.2 25223 8.9 GATA2 FOS JUNB TBX21 MEF2D PBX2 MXD3 NBN HMBOX1 HNF4A FLJ27354 LRRC8D ZNF326 GEMIN8P4 RN7SKP272 LRRC8C LRRC8B GBP7 GC01M089607 LOC105378845
GH01F089612 0.6 Ensembl 17.2 +20.5 20494 0.4 RAD51 IKZF1 NBN MLLT1 BMI1 FLJ27354 GC01M089607 LRRC8C
GH01F089656 0.8 Ensembl 12.7 -23.4 -23407 0.2 FLJ27354 LRRC8C LOC100505788 ENSG00000271949
GH01F089659 0.8 Ensembl ENCODE 12.7 -27.6 -27596 2.3 HLF CEBPB FEZF1 MNT EBF1 YY1 ZFP69B ZNF692 ATF3 SCRT2 LRRC8C FLJ27354 LOC101927975 GEMIN8P4 ZNF326 RN7SKP272 LOC100505788 ENSG00000271949
GH01F089657 0.9 Ensembl ENCODE 12.7 -25.1 -25146 1.4 MTA2 CBFB JUNB BMI1 EBF1 TBX21 GABPA RELA YY1 CBX5 FLJ27354 LRRC8C LOC101927975 LOC100505788 ENSG00000271949
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FLJ27354 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ27354 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001522303 -806 3401 HDGF ATF1 ZFP64 SIN3A ZNF2 GLIS2 ZNF143 ZNF207 ZNF263 SP3

Genomic Location for FLJ27354 Gene

Chromosome:
1
Start:
89,583,241 bp from pter
End:
89,632,894 bp from pter
Size:
49,654 bases
Orientation:
Minus strand

Genomic View for FLJ27354 Gene

Genes around FLJ27354 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ27354 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ27354 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ27354 Gene

Proteins for FLJ27354 Gene

Post-translational modifications for FLJ27354 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ27354 Gene

Domains & Families for FLJ27354 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ27354 Gene

Function for FLJ27354 Gene

Phenotypes for FLJ27354 Gene

GenomeRNAi human phenotypes for FLJ27354:
genes like me logo Genes that share phenotypes with FLJ27354: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ27354 Gene

Localization for FLJ27354 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ27354 Gene

Pathways & Interactions for FLJ27354 Gene

SuperPathways for FLJ27354 Gene

No Data Available

Interacting Proteins for FLJ27354 Gene

Gene Ontology (GO) - Biological Process for FLJ27354 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ27354 Gene

Transcripts for FLJ27354 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ27354 Gene

No ASD Table

Relevant External Links for FLJ27354 Gene

GeneLoc Exon Structure for
FLJ27354

Expression for FLJ27354 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ27354 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ27354 Gene

This gene is overexpressed in Testis (x4.9).
genes like me logo Genes that share expression patterns with FLJ27354: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ27354 Gene

Orthologs for FLJ27354 Gene

Evolution for FLJ27354 Gene

ENSEMBL:
Gene Tree for FLJ27354 (if available)
TreeFam:
Gene Tree for FLJ27354 (if available)

No data available for Orthologs for FLJ27354 Gene

Paralogs for FLJ27354 Gene

No data available for Paralogs for FLJ27354 Gene

Variants for FLJ27354 Gene

Sequence variations from dbSNP and Humsavar for FLJ27354 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10047070 -- 89,633,156(+) GAGAA(C/G)TAGGA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs10552750 -- 89,625,246(+) TGTAT(-/AA)AATTC intron-variant
rs111460520 -- 89,633,608(+) AGCGG(C/G)AGGTC intron-variant, upstream-variant-2KB
rs111504374 -- 89,625,247(+) GTATA(A/T)AATTC intron-variant
rs111723165 -- 89,633,475(+) GCCCG(C/G)CCGGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FLJ27354 Gene

Variant ID Type Subtype PubMed ID
esv3586765 CNV gain 21293372
esv3586769 CNV gain 21293372
nsv508023 OTHER sequence alteration 20534489
nsv830559 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ27354 Gene

Disorders for FLJ27354 Gene

Relevant External Links for FLJ27354

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ27354

No disorders were found for FLJ27354 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ27354 Gene

Publications for FLJ27354 Gene

No publications were found for FLJ27354 Gene.

Products for FLJ27354 Gene

Sources for FLJ27354 Gene

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