Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FLJ27354 Gene

Subcategory (RNA class) for FLJ27354 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ27354 Gene

  • Uncharacterized LOC400761 3 5

External Ids for FLJ27354 Gene

Previous GeneCards Identifiers for FLJ27354 Gene

  • GC01M089803
  • GC01U901377
  • GC01M090049

Summaries for FLJ27354 Gene

GeneCards Summary for FLJ27354 Gene

FLJ27354 (Uncharacterized LOC400761) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ27354 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ27354 Gene

Genomics for FLJ27354 Gene

Regulatory Elements for FLJ27354 Gene

Enhancers for FLJ27354 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H089611 1.5 FANTOM5 ENCODE dbSUPER 17.2 +21.1 21086 0.4 TBL1XR1 BACH1 BMI1 EBF1 BATF RELA EED ATF7 ETV6 RUNX3 FLJ27354 LRRC8C ZNF326 GC01M089607
GH01H089717 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -86.9 -86944 4.5 ARNT FEZF1 ZNF2 ZNF121 ATF7 KLF7 RUNX3 SP3 JUNB REST LRRC8C LOC101927975 FLJ27354 LRRC8D GBP5 GC01P089694 GC01P089762
GH01H089609 1.2 Ensembl ENCODE dbSUPER 17.2 +22.4 22394 1.8 SOX13 TBP DRAP1 SAP130 ZMYM3 ZIC2 TEAD3 ZFP69B ZGPAT MXD3 FLJ27354 GC01M089607 LRRC8C
GH01H089669 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -37.5 -37481 2.1 HDGF PKNOX1 TBL1XR1 BACH1 SIN3A BMI1 BATF RELA ATF7 NFE2 LRRC8C LOC101927975 FLJ27354 GBP4 GBP5 LRRC8D ZNF326 LRRC8B LOC100505788 GC01P089694
GH01H089606 1.1 Ensembl ENCODE dbSUPER 17.2 +25.1 25094 3.2 HDAC1 LEF1 MEF2D FOSL1 GATA2 HMBOX1 CREB1 KDM1A EGR2 FLJ27354 LRRC8D LRRC8B GC01M089607 LOC105378845
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ27354 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FLJ27354 Gene

Genomic Locations for FLJ27354 Gene
chr1:89,583,241-89,632,894
(GRCh38/hg38)
Size:
49,654 bases
Orientation:
Minus strand
chr1:90,048,800-90,098,453
(GRCh37/hg19)

Genomic View for FLJ27354 Gene

Genes around FLJ27354 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ27354 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ27354 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ27354 Gene

Proteins for FLJ27354 Gene

Post-translational modifications for FLJ27354 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ27354 Gene

Domains & Families for FLJ27354 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ27354 Gene

Function for FLJ27354 Gene

Phenotypes for FLJ27354 Gene

GenomeRNAi human phenotypes for FLJ27354:
genes like me logo Genes that share phenotypes with FLJ27354: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ27354 Gene

Localization for FLJ27354 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ27354 Gene

Pathways & Interactions for FLJ27354 Gene

SuperPathways for FLJ27354 Gene

No Data Available

Interacting Proteins for FLJ27354 Gene

Gene Ontology (GO) - Biological Process for FLJ27354 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ27354 Gene

Drugs & Compounds for FLJ27354 Gene

No Compound Related Data Available

Transcripts for FLJ27354 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ27354 Gene

No ASD Table

Relevant External Links for FLJ27354 Gene

GeneLoc Exon Structure for
FLJ27354

Expression for FLJ27354 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ27354 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ27354 Gene

This gene is overexpressed in Testis (x4.9).
genes like me logo Genes that share expression patterns with FLJ27354: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ27354 Gene

Orthologs for FLJ27354 Gene

Evolution for FLJ27354 Gene

ENSEMBL:
Gene Tree for FLJ27354 (if available)
TreeFam:
Gene Tree for FLJ27354 (if available)

No data available for Orthologs for FLJ27354 Gene

Paralogs for FLJ27354 Gene

No data available for Paralogs for FLJ27354 Gene

Variants for FLJ27354 Gene

Sequence variations from dbSNP and Humsavar for FLJ27354 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000109059 -- 89,632,864(+) CCCCC(A/G)GCGGC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000538789 -- 89,626,794(+) CAACA(C/T)GGAAG intron-variant
rs1000544470 -- 89,632,729(+) GTGAG(A/G)GATGA intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000791105 -- 89,625,551(+) AATGC(C/T)AAAAA intron-variant
rs1000822428 -- 89,625,265(+) AAACA(A/T)GCCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ27354 Gene

Variant ID Type Subtype PubMed ID
nsv830559 CNV gain 17160897
nsv508023 OTHER sequence alteration 20534489
esv3586769 CNV gain 21293372
esv3586765 CNV gain 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ27354 Gene

Disorders for FLJ27354 Gene

Relevant External Links for FLJ27354

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ27354

No disorders were found for FLJ27354 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ27354 Gene

Publications for FLJ27354 Gene

  1. Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes. (PMID: 28881755) Sun Y … Mao Y (Oncotarget 2017) 3

Products for FLJ27354 Gene

Sources for FLJ27354 Gene

Content
Loading form....