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Aliases for FLJ22447 Gene

Subcategory (RNA class) for FLJ22447 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ22447 Gene

  • Uncharacterized LOC400221 3 5

External Ids for FLJ22447 Gene

Previous GeneCards Identifiers for FLJ22447 Gene

  • GC14P061108
  • GC14U901085
  • GC14P062037

Summaries for FLJ22447 Gene

GeneCards Summary for FLJ22447 Gene

FLJ22447 (Uncharacterized LOC400221) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ22447 Gene

Genomics for FLJ22447 Gene

Regulatory Elements for FLJ22447 Gene

Enhancers for FLJ22447 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G061660 1.6 FANTOM5 Ensembl ENCODE 18.8 +91.8 91753 4.5 HDGF PKNOX1 SIN3A ZBTB7B YY1 CBX5 ZNF143 ZNF207 FOS CEBPZ FLJ22447 HIF1A TRMT5 LOC101927780 GC14P061694 GC14P061590
GH14G061615 1.4 FANTOM5 Ensembl ENCODE dbSUPER 16.9 +45.8 45758 1.6 CTCF PKNOX1 JUND ZMYM3 KDM1A EP300 FLJ22447 LOC101927780 HIF1A SYT16 GC14P061590 GC14P061694
GH14G061468 2 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -92.9 -92897 17.7 PKNOX1 ATF1 FOXA2 SIN3A FEZF1 BRCA1 ZNF2 YY1 GATA2 ELK1 HIF1A LOC101927780 FLJ22447 SNAPC1 HIF1A-AS1 PRKCH GC14M061347 ENSG00000247287
GH14G061593 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.5 +24.1 24118 2.9 HDGF ZSCAN4 GATA2 ZNF207 RELB IKZF2 CREM ZNF362 YY2 CBFB HIF1A LOC101927780 FLJ22447 GC14P061590 GC14P061694
GH14G061717 1.2 Ensembl ENCODE dbSUPER 16.9 +149.1 149117 3.4 CTCF KLF1 ZNF10 HLF ZBTB8A RAD21 PRDM6 SCRT2 FOS ZBTB33 FLJ22447 HIF1A LOC101927780 GC14P061728 HIF1A-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ22447 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ22447 Gene

Chromosome:
14
Start:
61,570,540 bp from pter
End:
61,658,696 bp from pter
Size:
88,157 bases
Orientation:
Plus strand

Genomic View for FLJ22447 Gene

Genes around FLJ22447 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ22447 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ22447 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ22447 Gene

Proteins for FLJ22447 Gene

Post-translational modifications for FLJ22447 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ22447 Gene

Domains & Families for FLJ22447 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ22447 Gene

Function for FLJ22447 Gene

genes like me logo Genes that share phenotypes with FLJ22447: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ22447 Gene

Localization for FLJ22447 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ22447 Gene

Pathways & Interactions for FLJ22447 Gene

SuperPathways for FLJ22447 Gene

No Data Available

Interacting Proteins for FLJ22447 Gene

Gene Ontology (GO) - Biological Process for FLJ22447 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ22447 Gene

Transcripts for FLJ22447 Gene

mRNA/cDNA for FLJ22447 Gene

(2) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ22447 Gene

Uncharacterized LOC400221:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ22447 Gene

No ASD Table

Relevant External Links for FLJ22447 Gene

GeneLoc Exon Structure for
FLJ22447

Expression for FLJ22447 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ22447 Gene

SOURCE GeneReport for Unigene cluster for FLJ22447 Gene:

Hs.344000
genes like me logo Genes that share expression patterns with FLJ22447: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ22447 Gene

Orthologs for FLJ22447 Gene

Evolution for FLJ22447 Gene

ENSEMBL:
Gene Tree for FLJ22447 (if available)
TreeFam:
Gene Tree for FLJ22447 (if available)

No data available for Orthologs for FLJ22447 Gene

Paralogs for FLJ22447 Gene

No data available for Paralogs for FLJ22447 Gene

Variants for FLJ22447 Gene

Sequence variations from dbSNP and Humsavar for FLJ22447 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000059507 -- 61,648,277(+) ACATT(A/T)AAAAA intron-variant
rs1000081749 -- 61,646,151(+) GTAGG(A/T)CAGTA intron-variant
rs1000086528 -- 61,612,371(+) TGGTA(C/T)AATGC intron-variant
rs1000121817 -- 61,604,790(+) CAGGA(C/G)AGTTA intron-variant
rs1000136833 -- 61,602,617(+) ACCCA(C/T)TGCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ22447 Gene

Variant ID Type Subtype PubMed ID
esv2748759 CNV deletion 23290073
esv2748760 CNV deletion 23290073
esv2748761 CNV deletion 23290073
esv2761838 CNV loss 21179565
nsv952847 CNV duplication 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ22447 Gene

Disorders for FLJ22447 Gene

Relevant External Links for FLJ22447

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ22447

No disorders were found for FLJ22447 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ22447 Gene

Publications for FLJ22447 Gene

  1. Interaction of amyotrophic lateral sclerosis/frontotemporal lobar degeneration-associated fused-in-sarcoma with proteins involved in metabolic and protein degradation pathways. (PMID: 25192599) Wang T. … Xu J. (Neurobiol. Aging 2015) 3 64

Products for FLJ22447 Gene

Sources for FLJ22447 Gene

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