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Aliases for FLJ21408 Gene

Subcategory (RNA class) for FLJ21408 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ21408 Gene

  • Uncharacterized LOC400512 3 5
  • CTD-3203P2.2 3

External Ids for FLJ21408 Gene

Previous GeneCards Identifiers for FLJ21408 Gene

  • GC16P027188
  • GC16U900563

Summaries for FLJ21408 Gene

GeneCards Summary for FLJ21408 Gene

FLJ21408 (Uncharacterized LOC400512) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ21408 Gene

Genomics for FLJ21408 Gene

Regulatory Elements for FLJ21408 Gene

Enhancers for FLJ21408 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F027312 1.8 FANTOM5 Ensembl ENCODE 16.9 +54.6 54568 19.6 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207 IL4R FLJ21408 NSMCE1 IL21R KIAA0556 GSG1L ENSG00000259940 KDM8 ENSG00000274092 PIR58561
GH16F027263 1.5 FANTOM5 Ensembl ENCODE 8.7 -3.5 -3515 1.8 ELF3 TBP ARID4B THRB RAD21 DNMT3B RARA FOS MIXL1 THAP11 FLJ21408 ENSG00000259940
GH16F027188 1 FANTOM5 ENCODE 11.6 -78.6 -78570 1.5 BCOR ZNF146 ZFP64 ZMYM3 RAD21 TEAD3 YY1 HNF4G ZBTB20 ZNF680 FLJ21408 NSMCE1 KDM8 PIR46766
GH16F027213 0.9 ENCODE 6.4 -53.6 -53585 2.0 ARID4B DMAP1 ZSCAN9 RAD21 YY1 CREM MIXL1 MXD4 PPARG NR2F2 FLJ21408 ENSG00000259940 KDM8
GH16F027264 0.4 Ensembl 8.7 -4.7 -4705 0.2 ZNF146 FLJ21408 ENSG00000259940
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ21408 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ21408 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001504497 495 1801 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 FOS ZNF263

Genomic Location for FLJ21408 Gene

Chromosome:
16
Start:
27,268,205 bp from pter
End:
27,290,492 bp from pter
Size:
22,288 bases
Orientation:
Plus strand

Genomic View for FLJ21408 Gene

Genes around FLJ21408 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ21408 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ21408 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ21408 Gene

Proteins for FLJ21408 Gene

Post-translational modifications for FLJ21408 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ21408 Gene

Domains & Families for FLJ21408 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ21408 Gene

Function for FLJ21408 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ21408 Gene

Localization for FLJ21408 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ21408 Gene

Pathways & Interactions for FLJ21408 Gene

SuperPathways for FLJ21408 Gene

No Data Available

Interacting Proteins for FLJ21408 Gene

Gene Ontology (GO) - Biological Process for FLJ21408 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ21408 Gene

Transcripts for FLJ21408 Gene

mRNA/cDNA for FLJ21408 Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ21408 Gene

Uncharacterized LOC400512:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ21408 Gene

No ASD Table

Relevant External Links for FLJ21408 Gene

GeneLoc Exon Structure for
FLJ21408

Expression for FLJ21408 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ21408 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ21408 Gene

This gene is overexpressed in Testis (x6.3) and Whole Blood (x4.4).

SOURCE GeneReport for Unigene cluster for FLJ21408 Gene:

Hs.434412
genes like me logo Genes that share expression patterns with FLJ21408: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ21408 Gene

Orthologs for FLJ21408 Gene

Evolution for FLJ21408 Gene

ENSEMBL:
Gene Tree for FLJ21408 (if available)
TreeFam:
Gene Tree for FLJ21408 (if available)

No data available for Orthologs for FLJ21408 Gene

Paralogs for FLJ21408 Gene

No data available for Paralogs for FLJ21408 Gene

Variants for FLJ21408 Gene

Sequence variations from dbSNP and Humsavar for FLJ21408 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs11074850 -- 27,274,866(+) aaaat(A/T)aaaat intron-variant
rs11074851 -- 27,284,642(+) TAGTG(C/G)AATCT intron-variant
rs11074852 -- 27,289,275(+) ATCAG(C/T)ACCAG intron-variant
rs111284469 -- 27,267,735(+) ATGCA(-/T)TTTTT intron-variant, upstream-variant-2KB
rs112070393 -- 27,273,040(+) ACACC(-/A)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ21408 Gene

Variant ID Type Subtype PubMed ID
nsv524872 CNV loss 19592680
nsv1059454 CNV gain 25217958
esv3638319 CNV gain 21293372

Variation tolerance for FLJ21408 Gene

Gene Damage Index Score: 2.62; 45.30% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for FLJ21408 Gene

Disorders for FLJ21408 Gene

Relevant External Links for FLJ21408

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ21408

No disorders were found for FLJ21408 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ21408 Gene

Publications for FLJ21408 Gene

No publications were found for FLJ21408 Gene.

Products for FLJ21408 Gene

Sources for FLJ21408 Gene

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