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Aliases for FLJ21408 Gene

Subcategory (RNA class) for FLJ21408 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ21408 Gene

  • Uncharacterized LOC400512 3
  • CTD-3203P2.2 3

External Ids for FLJ21408 Gene

Summaries for FLJ21408 Gene

GeneCards Summary for FLJ21408 Gene

FLJ21408 (Uncharacterized LOC400512) is a RNA Gene, and belongs to ncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ21408 Gene

Genomics for FLJ21408 Gene

Genomic Location for FLJ21408 Gene

Start:
27,268,205 bp from pter
End:
27,290,492 bp from pter
Size:
22,288 bases
Orientation:
Plus strand

Genomic View for FLJ21408 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FLJ21408 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ21408 Gene

No data available for Regulatory Elements for FLJ21408 Gene

Proteins for FLJ21408 Gene

Post-translational modifications for FLJ21408 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ21408 Gene

Domains for FLJ21408 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for FLJ21408 Gene

Function for FLJ21408 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FLJ21408 Gene

Localization for FLJ21408 Gene

No data available for Gene Ontology (GO) - Cellular Components for FLJ21408 Gene

Pathways for FLJ21408 Gene

SuperPathways for FLJ21408 Gene

No Data Available

Interacting Proteins for FLJ21408 Gene

Gene Ontology (GO) - Biological Process for FLJ21408 Gene

None

No data available for Pathways by source for FLJ21408 Gene

Transcripts for FLJ21408 Gene

mRNA/cDNA for FLJ21408 Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ21408 Gene

Uncharacterized LOC400512:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ21408 Gene

No ASD Table

Relevant External Links for FLJ21408 Gene

GeneLoc Exon Structure for
FLJ21408

Expression for FLJ21408 Gene

mRNA expression in normal human tissues for FLJ21408 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ21408 Gene

This gene is overexpressed in Testis (6.3) and Whole Blood (4.4).

SOURCE GeneReport for Unigene cluster for FLJ21408 Gene Hs.434412

genes like me logo Genes that share expressions with FLJ21408: view

Orthologs for FLJ21408 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for FLJ21408 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia 4921524M04Rik 16
Species with no ortholog for FLJ21408:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FLJ21408 Gene

ENSEMBL:
Gene Tree for FLJ21408 (if available)
TreeFam:
Gene Tree for FLJ21408 (if available)

Paralogs for FLJ21408 Gene

No data available for Paralogs for FLJ21408 Gene

Variants for FLJ21408 Gene

Sequence variations from dbSNP and Humsavar for FLJ21408 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs4078053 -- 27,288,686(-) tgggc(C/T)caagc intron-variant
rs4306512 -- 27,276,582(+) atata(A/G)aatat intron-variant
rs4340329 -- 27,287,704(+) gaaaa(A/C)caaat intron-variant
rs4416018 -- 27,287,898(+) gcgac(A/G)cacca intron-variant
rs4479231 -- 27,285,546(+) gcagc(A/G)gctca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ21408 Gene

Variant ID Type Subtype PubMed ID
nsv524872 CNV Loss 19592680

Relevant External Links for FLJ21408 Gene

HapMap Linkage Disequilibrium report
FLJ21408

Disorders for FLJ21408 Gene

No disorders were found for FLJ21408 Gene.

No data available for UniProtKB/Swiss-Prot for FLJ21408 Gene

Publications for FLJ21408 Gene

No publications were found for FLJ21408 Gene.

Products for FLJ21408 Gene

Sources for FLJ21408 Gene

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