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Aliases for FLJ21408 Gene

Subcategory (RNA class) for FLJ21408 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ21408 Gene

  • Uncharacterized LOC400512 3 5
  • CTD-3203P2.2 3

External Ids for FLJ21408 Gene

Previous GeneCards Identifiers for FLJ21408 Gene

  • GC16P027188
  • GC16U900563

Summaries for FLJ21408 Gene

GeneCards Summary for FLJ21408 Gene

FLJ21408 (Uncharacterized LOC400512) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ21408 Gene

Genomics for FLJ21408 Gene

Regulatory Elements for FLJ21408 Gene

Enhancers for FLJ21408 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around FLJ21408 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ21408 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FLJ21408 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ21408 Gene

Chromosome:
16
Start:
27,268,205 bp from pter
End:
27,290,492 bp from pter
Size:
22,288 bases
Orientation:
Plus strand

Genomic View for FLJ21408 Gene

Genes around FLJ21408 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ21408 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ21408 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ21408 Gene

Proteins for FLJ21408 Gene

Post-translational modifications for FLJ21408 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ21408 Gene

Domains & Families for FLJ21408 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ21408 Gene

Function for FLJ21408 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ21408 Gene

Localization for FLJ21408 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ21408 Gene

Pathways & Interactions for FLJ21408 Gene

SuperPathways for FLJ21408 Gene

No Data Available

Interacting Proteins for FLJ21408 Gene

Gene Ontology (GO) - Biological Process for FLJ21408 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ21408 Gene

Drugs & Compounds for FLJ21408 Gene

No Compound Related Data Available

Transcripts for FLJ21408 Gene

mRNA/cDNA for FLJ21408 Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ21408 Gene

Uncharacterized LOC400512:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ21408 Gene

No ASD Table

Relevant External Links for FLJ21408 Gene

GeneLoc Exon Structure for
FLJ21408

Expression for FLJ21408 Gene

mRNA expression in normal human tissues for FLJ21408 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ21408 Gene

This gene is overexpressed in Testis (x6.3) and Whole Blood (x4.4).

SOURCE GeneReport for Unigene cluster for FLJ21408 Gene Hs.434412

genes like me logo Genes that share expression patterns with FLJ21408: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for FLJ21408 Gene

Orthologs for FLJ21408 Gene

Evolution for FLJ21408 Gene

ENSEMBL:
Gene Tree for FLJ21408 (if available)
TreeFam:
Gene Tree for FLJ21408 (if available)

No data available for Orthologs for FLJ21408 Gene

Paralogs for FLJ21408 Gene

No data available for Paralogs for FLJ21408 Gene

Variants for FLJ21408 Gene

Sequence variations from dbSNP and Humsavar for FLJ21408 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs4306512 -- 27,276,582(+) atata(A/G)aatat intron-variant
rs4340329 -- 27,287,704(+) gaaaa(A/C)caaat intron-variant
rs4416018 -- 27,287,898(+) gcgac(A/G)cacca intron-variant
rs4479231 -- 27,285,546(+) gcagc(A/G)gctca intron-variant
rs4547335 -- 27,285,369(+) ACTCT(C/T)CAGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ21408 Gene

Variant ID Type Subtype PubMed ID
nsv524872 CNV Loss 19592680

Variation tolerance for FLJ21408 Gene

Gene Damage Index Score: 2.62; 45.30% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for FLJ21408 Gene

Disorders for FLJ21408 Gene

No disorders were found for FLJ21408 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FLJ21408 Gene

Publications for FLJ21408 Gene

No publications were found for FLJ21408 Gene.

Products for FLJ21408 Gene

Sources for FLJ21408 Gene

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