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Aliases for FLJ21408 Gene

Subcategory (RNA class) for FLJ21408 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ21408 Gene

  • Uncharacterized LOC400512 3 5
  • CTD-3203P2.2 3

External Ids for FLJ21408 Gene

Previous GeneCards Identifiers for FLJ21408 Gene

  • GC16P027188
  • GC16U900563

Summaries for FLJ21408 Gene

GeneCards Summary for FLJ21408 Gene

FLJ21408 (Uncharacterized LOC400512) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ21408 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ21408 Gene

Genomics for FLJ21408 Gene

GeneHancer (GH) Regulatory Elements for FLJ21408 Gene

Promoters and enhancers for FLJ21408 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I027267 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.7 697 3.1 HDGF PKNOX1 FOXA2 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZBTB7B IRF4 FLJ21408 NSMCE1 IL4R KDM8 ENSG00000259940
GH16I027268 Promoter 0.6 EPDnew 550.8 -1.2 -1152 0.1 ADNP NSMCE1 FLJ21408 ENSG00000259940
GH16I027312 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 16.9 +54.6 54568 19.6 HDGF PKNOX1 FOXA2 SMAD1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF207 IL4R FLJ21408 NSMCE1 GTF3C1 IL21R KIAA0556 GSG1L ENSG00000259940 KDM8 ENSG00000274092
GH16I027263 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 8.8 -3.5 -3540 1.8 ELF3 FOXA2 ARID4B SIN3A RAD21 DNMT3B THRB RARA ETS1 ATF7 FLJ21408 ENSG00000259940 NSMCE1
GH16I027188 Enhancer 0.9 FANTOM5 ENCODE 11.6 -78.6 -78569 1.5 TFAP4 FOXA2 TAF1 ZFP64 MAX RAD21 YY1 TEAD3 HNF4G ZBTB20 FLJ21408 NSMCE1 KDM8 PIR46766
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ21408 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FLJ21408 Gene

Genomic Locations for FLJ21408 Gene
chr16:27,268,205-27,290,492
(GRCh38/hg38)
Size:
22,288 bases
Orientation:
Plus strand
chr16:27,279,526-27,301,813
(GRCh37/hg19)

Genomic View for FLJ21408 Gene

Genes around FLJ21408 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ21408 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ21408 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ21408 Gene

Proteins for FLJ21408 Gene

Post-translational modifications for FLJ21408 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ21408 Gene

Domains & Families for FLJ21408 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ21408 Gene

Function for FLJ21408 Gene

Phenotypes From GWAS Catalog for FLJ21408 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ21408 Gene

Localization for FLJ21408 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ21408 Gene

Pathways & Interactions for FLJ21408 Gene

SuperPathways for FLJ21408 Gene

No Data Available

Interacting Proteins for FLJ21408 Gene

Gene Ontology (GO) - Biological Process for FLJ21408 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ21408 Gene

Drugs & Compounds for FLJ21408 Gene

No Compound Related Data Available

Transcripts for FLJ21408 Gene

mRNA/cDNA for FLJ21408 Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ21408 Gene

Uncharacterized LOC400512:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ21408 Gene

No ASD Table

Relevant External Links for FLJ21408 Gene

GeneLoc Exon Structure for
FLJ21408

Expression for FLJ21408 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ21408 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ21408 Gene

This gene is overexpressed in Testis (x6.3) and Whole Blood (x4.4).

SOURCE GeneReport for Unigene cluster for FLJ21408 Gene:

Hs.434412
genes like me logo Genes that share expression patterns with FLJ21408: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ21408 Gene

Orthologs for FLJ21408 Gene

Evolution for FLJ21408 Gene

ENSEMBL:
Gene Tree for FLJ21408 (if available)
TreeFam:
Gene Tree for FLJ21408 (if available)

No data available for Orthologs for FLJ21408 Gene

Paralogs for FLJ21408 Gene

No data available for Paralogs for FLJ21408 Gene

Variants for FLJ21408 Gene

Sequence variations from dbSNP and Humsavar for FLJ21408 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000007600 -- 27,268,950(+) C/T intron_variant
rs1000103418 -- 27,269,234(+) C/G intron_variant
rs1000142522 -- 27,270,291(+) C/T intron_variant
rs1000285765 -- 27,276,255(+) C/T intron_variant
rs1000363184 -- 27,282,071(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ21408 Gene

Variant ID Type Subtype PubMed ID
esv3638319 CNV gain 21293372
nsv1059454 CNV gain 25217958
nsv524872 CNV loss 19592680

Variation tolerance for FLJ21408 Gene

Gene Damage Index Score: 2.62; 45.30% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Additional Variant Information for FLJ21408 Gene

Disorders for FLJ21408 Gene

Additional Disease Information for FLJ21408

No disorders were found for FLJ21408 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ21408 Gene

Publications for FLJ21408 Gene

No publications were found for FLJ21408 Gene.

Products for FLJ21408 Gene

Sources for FLJ21408 Gene

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