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Aliases for FLJ20021 Gene

Subcategory (RNA class) for FLJ20021 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ20021 Gene

  • Uncharacterized LOC90024 3 5

External Ids for FLJ20021 Gene

Previous GeneCards Identifiers for FLJ20021 Gene

  • GC04P102626
  • GC04P102487
  • GC04P102268
  • GC04P098006

Summaries for FLJ20021 Gene

GeneCards Summary for FLJ20021 Gene

FLJ20021 (Uncharacterized LOC90024) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ20021 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ20021 Gene

Genomics for FLJ20021 Gene

Regulatory Elements for FLJ20021 Gene

Enhancers for FLJ20021 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H101345 1.3 ENCODE dbSUPER 27.4 +0.3 296 5 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 FOS SP3 FLJ20021 PPP3CA
GH04H101354 1.4 Ensembl ENCODE dbSUPER 23.6 +8.7 8728 3 ELF3 PKNOX1 FOXA2 TBL1XR1 BMI1 DMAP1 RARA RFX5 FOS RCOR1 FLJ20021 MIR1255A PPP3CA BANK1
GH04H101278 1.4 FANTOM5 Ensembl ENCODE 20.3 -68.4 -68442 2 ATF1 ZBTB21 ZNF140 FEZF1 ZNF664 HIC1 POLR2A ATF7 NFE2 MAFK FLJ20021 PPP3CA GC04M101296 MIR8066
GH04H101419 0.8 Ensembl ENCODE 26.3 +71.7 71729 0 PKNOX1 TBL1XR1 ETV6 RUNX3 CREM IKZF2 EZH2 FLJ20021 PPP3CA BANK1 GC04P101457
GH04H101327 0.9 Ensembl ENCODE 16.5 -19.4 -19445 2 PKNOX1 TBL1XR1 NR2F1 JUNB DPF2 BATF ZNF217 IKZF1 ATF7 IKZF2 FLJ20021 MIR1255A GC04M101296
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ20021 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ20021 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000171244 -677 3401 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 FOS SP3

Genomic Location for FLJ20021 Gene

Chromosome:
4
Start:
101,347,777 bp from pter
End:
101,348,883 bp from pter
Size:
1,107 bases
Orientation:
Plus strand

Genomic View for FLJ20021 Gene

Genes around FLJ20021 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ20021 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ20021 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ20021 Gene

Proteins for FLJ20021 Gene

Post-translational modifications for FLJ20021 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ20021 Gene

Domains & Families for FLJ20021 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ20021 Gene

Function for FLJ20021 Gene

Phenotypes From GWAS Catalog for FLJ20021 Gene

Phenotypes for FLJ20021 Gene

GenomeRNAi human phenotypes for FLJ20021:
genes like me logo Genes that share phenotypes with FLJ20021: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ20021 Gene

Localization for FLJ20021 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ20021 Gene

Pathways & Interactions for FLJ20021 Gene

SuperPathways for FLJ20021 Gene

No Data Available

Interacting Proteins for FLJ20021 Gene

Gene Ontology (GO) - Biological Process for FLJ20021 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ20021 Gene

Drugs & Compounds for FLJ20021 Gene

No Compound Related Data Available

Transcripts for FLJ20021 Gene

mRNA/cDNA for FLJ20021 Gene

(2) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ20021 Gene

Uncharacterized LOC90024:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ20021 Gene

No ASD Table

Relevant External Links for FLJ20021 Gene

GeneLoc Exon Structure for
FLJ20021

Expression for FLJ20021 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ20021 Gene

SOURCE GeneReport for Unigene cluster for FLJ20021 Gene:

Hs.534513
genes like me logo Genes that share expression patterns with FLJ20021: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ20021 Gene

Orthologs for FLJ20021 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FLJ20021 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 98 (a)
OneToOne
Species where no ortholog for FLJ20021 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FLJ20021 Gene

ENSEMBL:
Gene Tree for FLJ20021 (if available)
TreeFam:
Gene Tree for FLJ20021 (if available)

Paralogs for FLJ20021 Gene

No data available for Paralogs for FLJ20021 Gene

Variants for FLJ20021 Gene

Sequence variations from dbSNP and Humsavar for FLJ20021 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000024573 -- 101,348,336(+) CACCG(A/G)GCGGC nc-transcript-variant, upstream-variant-2KB
rs1000278794 -- 101,348,971(+) TAAAA(C/T)ACACA intron-variant, upstream-variant-2KB
rs1000377615 -- 101,348,126(+) GAGAG(A/G)GCGGA intron-variant, upstream-variant-2KB
rs1001382353 -- 101,347,826(+) CCAGT(C/G)CCTGC nc-transcript-variant, upstream-variant-2KB
rs10021277 -- 101,348,567(+) TTCCA(C/G)TCATT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FLJ20021 Gene

Variant ID Type Subtype PubMed ID
esv2657237 CNV deletion 23128226
nsv1011351 CNV gain 25217958
nsv1073361 CNV deletion 25765185
nsv509012 CNV insertion 20534489
nsv950367 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ20021 Gene

Disorders for FLJ20021 Gene

Relevant External Links for FLJ20021

Genetic Association Database (GAD)
FLJ20021
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ20021

No disorders were found for FLJ20021 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ20021 Gene

Publications for FLJ20021 Gene

  1. A genome-wide association study of sporadic ALS in a homogenous Irish population. (PMID: 18057069) Cronin S … Hardiman O (Human molecular genetics 2008) 45 60

Products for FLJ20021 Gene

Sources for FLJ20021 Gene

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