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Aliases for FLJ20021 Gene

Subcategory (RNA class) for FLJ20021 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ20021 Gene

  • Uncharacterized LOC90024 3 5

External Ids for FLJ20021 Gene

Previous GeneCards Identifiers for FLJ20021 Gene

  • GC04P102626
  • GC04P102487
  • GC04P102268
  • GC04P098006

Summaries for FLJ20021 Gene

GeneCards Summary for FLJ20021 Gene

FLJ20021 (Uncharacterized LOC90024) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ20021 Gene

Genomics for FLJ20021 Gene

Regulatory Elements for FLJ20021 Gene

Enhancers for FLJ20021 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F101345 1.1 ENCODE 27.4 +0.3 296 5.9 HDGF ATF1 PKNOX1 CREB3L1 ARID4B SIN3A GLI4 DMAP1 YBX1 ZNF48 FLJ20021 PPP3CA
GH04F101278 1.4 FANTOM5 Ensembl ENCODE 21.3 -67.9 -67942 3.1 ATF1 ZNF140 SIN3A FEZF1 HIC1 ZNF664 NFE2 MAFK NFE2L2 ZEB2 FLJ20021 PPP3CA GC04M101296 MIR8066
GH04F101418 1 Ensembl ENCODE 28.5 +71.3 71324 2.2 PKNOX1 TBL1XR1 BMI1 ZNF316 CTBP1 ETV6 CREM MTA2 CBFB JUNB FLJ20021 PPP3CA BANK1 GC04P101457
GH04F101354 1.2 Ensembl ENCODE 23.6 +8.7 8728 3.6 ELF3 PKNOX1 TBL1XR1 SIN3A BMI1 DMAP1 RARA RFX5 CBX5 FOS FLJ20021 MIR1255A PPP3CA BANK1
GH04F101306 0.7 Ensembl 35.3 -41.0 -40977 1.6 ZNF146 TBL1XR1 MTA2 FEZF1 TBX21 OSR2 ZFHX2 IKZF1 GLIS1 PRDM10 FLJ20021 MIR1255A PPP3CA GC04M101296
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ20021 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ20021 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001246361 -777 4001 HDGF ATF1 PKNOX1 CREB3L1 ARID4B SIN3A GLI4 DMAP1 ZNF48 ZNF2

Genomic Location for FLJ20021 Gene

Chromosome:
4
Start:
101,347,777 bp from pter
End:
101,348,883 bp from pter
Size:
1,107 bases
Orientation:
Plus strand

Genomic View for FLJ20021 Gene

Genes around FLJ20021 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ20021 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ20021 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ20021 Gene

Proteins for FLJ20021 Gene

Post-translational modifications for FLJ20021 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ20021 Gene

Domains & Families for FLJ20021 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ20021 Gene

Function for FLJ20021 Gene

Phenotypes for FLJ20021 Gene

GenomeRNAi human phenotypes for FLJ20021:
genes like me logo Genes that share phenotypes with FLJ20021: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ20021 Gene

Localization for FLJ20021 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ20021 Gene

Pathways & Interactions for FLJ20021 Gene

SuperPathways for FLJ20021 Gene

No Data Available

Interacting Proteins for FLJ20021 Gene

Gene Ontology (GO) - Biological Process for FLJ20021 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ20021 Gene

Transcripts for FLJ20021 Gene

mRNA/cDNA for FLJ20021 Gene

(2) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ20021 Gene

Uncharacterized LOC90024:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ20021 Gene

No ASD Table

Relevant External Links for FLJ20021 Gene

GeneLoc Exon Structure for
FLJ20021

Expression for FLJ20021 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ20021 Gene

SOURCE GeneReport for Unigene cluster for FLJ20021 Gene:

Hs.534513
genes like me logo Genes that share expression patterns with FLJ20021: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ20021 Gene

Orthologs for FLJ20021 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FLJ20021 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 98 (a)
OneToOne
Species where no ortholog for FLJ20021 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FLJ20021 Gene

ENSEMBL:
Gene Tree for FLJ20021 (if available)
TreeFam:
Gene Tree for FLJ20021 (if available)

Paralogs for FLJ20021 Gene

No data available for Paralogs for FLJ20021 Gene

Variants for FLJ20021 Gene

Sequence variations from dbSNP and Humsavar for FLJ20021 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10021277 -- 101,348,567(+) TTCCA(C/G)TCATT nc-transcript-variant, upstream-variant-2KB
rs113086344 -- 101,346,350(+) ACCAT(A/T)AACCC intron-variant, upstream-variant-2KB
rs113561582 -- 101,348,673(+) GAAAG(C/T)CAGGC nc-transcript-variant, upstream-variant-2KB
rs114160642 -- 101,348,418(+) TCGGA(A/G)CTACC nc-transcript-variant, upstream-variant-2KB
rs114272959 -- 101,347,186(+) GGAGC(C/T)CCACG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for FLJ20021 Gene

Variant ID Type Subtype PubMed ID
esv2657237 CNV deletion 23128226
nsv1011351 CNV gain 25217958
nsv1073361 CNV deletion 25765185
nsv509012 CNV insertion 20534489
nsv950367 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ20021 Gene

Disorders for FLJ20021 Gene

Relevant External Links for FLJ20021

Genetic Association Database (GAD)
FLJ20021
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ20021

No disorders were found for FLJ20021 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ20021 Gene

Publications for FLJ20021 Gene

  1. A genome-wide association study of sporadic ALS in a homogenous Irish population. (PMID: 18057069) Cronin S. … Hardiman O. (Hum. Mol. Genet. 2008) 46 64

Products for FLJ20021 Gene

Sources for FLJ20021 Gene

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