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Aliases for FLJ16779 Gene

Subcategory (RNA class) for FLJ16779 Gene


Quality Score for this RNA gene is


Aliases for FLJ16779 Gene

  • Uncharacterized LOC100192386 3 5

External Ids for FLJ16779 Gene

ORGUL Members for FLJ16779 Gene

Previous GeneCards Identifiers for FLJ16779 Gene

  • GC20U900409
  • GC20P061885

Summaries for FLJ16779 Gene

GeneCards Summary for FLJ16779 Gene

FLJ16779 (Uncharacterized LOC100192386) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ16779 Gene

Genomics for FLJ16779 Gene

Regulatory Elements for FLJ16779 Gene

Enhancers for FLJ16779 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F063253 0.4 ENCODE 0.8 -0.3 -275 1.3 SUZ12 HLF CEBPB ZBTB8A CEBPG RAD21 POLR2A CEBPA ZBTB26 ZBTB20 BIRC7 NKAIN4 COL20A1 RNU6-994P FLJ16779 GC20M063246
GH20F063254 0.5 ENCODE 0.8 +0.7 656 0.1 SMARCA4 EZH2 COL20A1 RNU6-994P FLJ16779 GC20M063249
GH20F063256 0.6 ENCODE 0.8 +1.1 1050 0.5 CTCF SMARCA4 CTBP2 ZNF600 NKAIN4 COL20A1 RNU6-994P ENSG00000231977 MIR124-3 BIRC7 FLJ16779 GC20M063249
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FLJ16779 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ16779 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for FLJ16779 Gene

63,253,978 bp from pter
63,261,615 bp from pter
7,638 bases
Plus strand

Genomic View for FLJ16779 Gene

Genes around FLJ16779 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ16779 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ16779 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ16779 Gene

Proteins for FLJ16779 Gene

Post-translational modifications for FLJ16779 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ16779 Gene

Domains & Families for FLJ16779 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ16779 Gene

Function for FLJ16779 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ16779 Gene

Localization for FLJ16779 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ16779 Gene

Pathways & Interactions for FLJ16779 Gene

SuperPathways for FLJ16779 Gene

No Data Available

Interacting Proteins for FLJ16779 Gene

Gene Ontology (GO) - Biological Process for FLJ16779 Gene


No data available for Pathways by source and SIGNOR curated interactions for FLJ16779 Gene

Transcripts for FLJ16779 Gene

mRNA/cDNA for FLJ16779 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ16779 Gene

Uncharacterized LOC100192386:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ16779 Gene

No ASD Table

Relevant External Links for FLJ16779 Gene

GeneLoc Exon Structure for

Expression for FLJ16779 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ16779 Gene

mRNA expression in normal human tissues for FLJ16779 Gene

SOURCE GeneReport for Unigene cluster for FLJ16779 Gene:

genes like me logo Genes that share expression patterns with FLJ16779: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ16779 Gene

Orthologs for FLJ16779 Gene

Evolution for FLJ16779 Gene

Gene Tree for FLJ16779 (if available)
Gene Tree for FLJ16779 (if available)

No data available for Orthologs for FLJ16779 Gene

Paralogs for FLJ16779 Gene

No data available for Paralogs for FLJ16779 Gene

Variants for FLJ16779 Gene

Sequence variations from dbSNP and Humsavar for FLJ16779 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs11086159 -- 63,261,930(+) CCTGA(A/T)TGCTG downstream-variant-500B
rs111748853 -- 63,257,482(+) ATGGA(C/G)AGCGG nc-transcript-variant
rs112065634 -- 63,257,541(+) GATGG(A/C)GAACG nc-transcript-variant
rs112145752 -- 63,253,821(+) GCTCC(A/C)CGCCG intron-variant, upstream-variant-2KB
rs112221121 -- 63,257,269(+) GTGAT(A/G)GGCAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ16779 Gene

Variant ID Type Subtype PubMed ID
dgv520n27 CNV loss 19166990
dgv7665n54 CNV loss 21841781
esv2722899 CNV deletion 23290073
esv32831 CNV loss 17666407
esv3646308 CNV loss 21293372
nsv3446 CNV deletion 18451855
nsv470560 CNV loss 18288195
nsv518905 CNV loss 19592680
nsv522880 CNV loss 19592680
nsv525279 CNV loss 19592680
nsv586562 CNV gain 21841781
nsv586563 CNV loss 21841781
nsv834032 CNV loss 17160897
nsv953306 CNV deletion 24416366
nsv9825 CNV gain 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ16779 Gene

Disorders for FLJ16779 Gene

Relevant External Links for FLJ16779

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for FLJ16779 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ16779 Gene

Publications for FLJ16779 Gene

  1. Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study. (PMID: 21779381) SchA1rks M. … Kurth T. (PLoS ONE 2011) 46 64

Products for FLJ16779 Gene

Sources for FLJ16779 Gene

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