Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FLJ16171 Gene

Subcategory (RNA class) for FLJ16171 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ16171 Gene

  • FLJ16171 Protein 3
  • CTC-281M20.1 3 5

External Ids for FLJ16171 Gene

Previous GeneCards Identifiers for FLJ16171 Gene

  • GC05M174278
  • GC05U901017

Summaries for FLJ16171 Gene

GeneCards Summary for FLJ16171 Gene

FLJ16171 (FLJ16171 Protein) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ16171 Gene

Genomics for FLJ16171 Gene

Regulatory Elements for FLJ16171 Gene

Enhancers for FLJ16171 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around FLJ16171 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ16171 Gene

Chromosome:
5
Start:
174,919,082 bp from pter
End:
174,995,731 bp from pter
Size:
76,650 bases
Orientation:
Minus strand

Genomic View for FLJ16171 Gene

Genes around FLJ16171 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ16171 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ16171 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ16171 Gene

Proteins for FLJ16171 Gene

Post-translational modifications for FLJ16171 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ16171 Gene

Domains & Families for FLJ16171 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ16171 Gene

Function for FLJ16171 Gene

Phenotypes for FLJ16171 Gene

GenomeRNAi human phenotypes for FLJ16171:
genes like me logo Genes that share phenotypes with FLJ16171: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ16171 Gene

Localization for FLJ16171 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ16171 Gene

Pathways & Interactions for FLJ16171 Gene

SuperPathways for FLJ16171 Gene

No Data Available

Interacting Proteins for FLJ16171 Gene

Gene Ontology (GO) - Biological Process for FLJ16171 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ16171 Gene

Drugs & Compounds for FLJ16171 Gene

No Compound Related Data Available

Transcripts for FLJ16171 Gene

mRNA/cDNA for FLJ16171 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ16171 Gene

FLJ16171 protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ16171 Gene

No ASD Table

Relevant External Links for FLJ16171 Gene

GeneLoc Exon Structure for
FLJ16171

Expression for FLJ16171 Gene

mRNA expression in normal human tissues for FLJ16171 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ16171 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x14.2), Brain - Nucleus accumbens (basal ganglia) (x12.4), and Brain - Putamen (basal ganglia) (x10.2).

SOURCE GeneReport for Unigene cluster for FLJ16171 Gene:

Hs.533036
genes like me logo Genes that share expression patterns with FLJ16171: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ16171 Gene

Orthologs for FLJ16171 Gene

Evolution for FLJ16171 Gene

ENSEMBL:
Gene Tree for FLJ16171 (if available)
TreeFam:
Gene Tree for FLJ16171 (if available)

No data available for Orthologs for FLJ16171 Gene

Paralogs for FLJ16171 Gene

No data available for Paralogs for FLJ16171 Gene

Variants for FLJ16171 Gene

Sequence variations from dbSNP and Humsavar for FLJ16171 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs166248 -- 174,928,798(+) ACATG(A/G)TTTGC intron-variant
rs173885 -- 174,928,404(-) GGCAG(A/G)CCCTG intron-variant
rs255607 -- 174,929,110(-) AGCCT(A/G)GGGCA intron-variant
rs255608 -- 174,928,989(-) GGAGG(C/T)GGAGG intron-variant
rs255609 -- 174,928,874(-) AAATT(C/G)TGAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ16171 Gene

Variant ID Type Subtype PubMed ID
esv2731152 CNV deletion 23290073
esv3304331 CNV mobile element insertion 20981092
esv3413427 CNV insertion 20981092
nsv327895 CNV deletion 16902084
nsv462535 CNV loss 19166990
nsv5140 CNV deletion 18451855
nsv600328 CNV loss 21841781
nsv830556 CNV gain 17160897
nsv964971 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ16171 Gene

Disorders for FLJ16171 Gene

No disorders were found for FLJ16171 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FLJ16171 Gene

Publications for FLJ16171 Gene

No publications were found for FLJ16171 Gene.

Products for FLJ16171 Gene

Sources for FLJ16171 Gene

Content