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Aliases for FLJ16171 Gene

Subcategory (RNA class) for FLJ16171 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ16171 Gene

  • FLJ16171 Protein 3
  • CTC-281M20.1 3

External Ids for FLJ16171 Gene

ORGUL Members for FLJ16171 Gene

Previous GeneCards Identifiers for FLJ16171 Gene

  • GC05M174278
  • GC05U901017

Summaries for FLJ16171 Gene

GeneCards Summary for FLJ16171 Gene

FLJ16171 (FLJ16171 Protein) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ16171 Gene

Genomics for FLJ16171 Gene

Genomic Location for FLJ16171 Gene

Start:
174,919,082 bp from pter
End:
174,995,731 bp from pter
Size:
76,650 bases
Orientation:
Minus strand

Genomic View for FLJ16171 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FLJ16171 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ16171 Gene

No data available for Regulatory Elements for FLJ16171 Gene

Proteins for FLJ16171 Gene

Post-translational modifications for FLJ16171 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ16171 Gene

Domains for FLJ16171 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ16171 Gene

Function for FLJ16171 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FLJ16171 Gene

Localization for FLJ16171 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ16171 Gene

Pathways for FLJ16171 Gene

SuperPathways for FLJ16171 Gene

No Data Available

Interacting Proteins for FLJ16171 Gene

Gene Ontology (GO) - Biological Process for FLJ16171 Gene

None

No data available for Pathways by source for FLJ16171 Gene

Transcripts for FLJ16171 Gene

mRNA/cDNA for FLJ16171 Gene

(2) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ16171 Gene

FLJ16171 protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ16171 Gene

No ASD Table

Relevant External Links for FLJ16171 Gene

GeneLoc Exon Structure for
FLJ16171

Expression for FLJ16171 Gene

mRNA expression in normal human tissues for FLJ16171 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ16171 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (14.2), Brain - Nucleus accumbens (basal ganglia) (12.4), and Brain - Putamen (basal ganglia) (10.2).

SOURCE GeneReport for Unigene cluster for FLJ16171 Gene Hs.533036

genes like me logo Genes that share expressions with FLJ16171: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for FLJ16171 Gene

Orthologs for FLJ16171 Gene

Evolution for FLJ16171 Gene

ENSEMBL:
Gene Tree for FLJ16171 (if available)
TreeFam:
Gene Tree for FLJ16171 (if available)

No data available for Orthologs for FLJ16171 Gene

Paralogs for FLJ16171 Gene

No data available for Paralogs for FLJ16171 Gene

Variants for FLJ16171 Gene

Sequence variations from dbSNP and Humsavar for FLJ16171 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs30943 -- 174,919,159(+) TACAC(C/T)TAAAG nc-transcript-variant
rs30944 -- 174,920,657(+) TTTTT(C/T)CTCAT intron-variant
rs30945 -- 174,920,949(+) CCTGT(A/G)GCCTA intron-variant
rs30946 -- 174,922,328(+) taatt(C/T)atcgt intron-variant
rs30947 -- 174,922,541(+) gaggc(A/G)ggcgg intron-variant

Relevant External Links for FLJ16171 Gene

HapMap Linkage Disequilibrium report
FLJ16171

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FLJ16171 Gene

Disorders for FLJ16171 Gene

No disorders were found for FLJ16171 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for FLJ16171 Gene

Publications for FLJ16171 Gene

No publications were found for FLJ16171 Gene.

Products for FLJ16171 Gene

Sources for FLJ16171 Gene

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