Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FLJ13224 Gene

Subcategory (RNA class) for FLJ13224 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ13224 Gene

  • Uncharacterized LOC79857 3 5

External Ids for FLJ13224 Gene

Previous GeneCards Identifiers for FLJ13224 Gene

  • GC12P031860
  • GC12P031500
  • GC12P031377
  • GC12P031368
  • GC12P031478

Summaries for FLJ13224 Gene

GeneCards Summary for FLJ13224 Gene

FLJ13224 (Uncharacterized LOC79857) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ13224 Gene

Genomics for FLJ13224 Gene

Regulatory Elements for FLJ13224 Gene

Enhancers for FLJ13224 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G031316 1.7 Ensembl ENCODE dbSUPER 10.9 -2.3 -2261 10.8 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 SIN3A ARID4B DMAP1 FLJ13224 H3F3C IPO8 FAM60A KIAA1551 DENND5B DENND5B-AS1 RNU5F-4P ENSG00000256176
GH12G031714 1.8 VISTA Ensembl ENCODE dbSUPER 10.2 +391.4 391386 3.0 HDGF PKNOX1 FOXA2 ARNT YY1 ZNF766 CBX5 ZNF207 FOS ZHX2 H3F3C FLJ13224 KIAA1551 FAM60A GC12P031714 STMN1P1
GH12G031730 1.4 ENCODE dbSUPER 12.2 +408.8 408820 5.0 HDGF PKNOX1 ARNT FEZF1 ZNF2 ZNF766 CBX5 ZNF207 FOS KLF13 FAM60A FLJ13224 BICD1 AMN1 GC12M031770
GH12G031121 1 Ensembl ENCODE 16.7 -205.8 -205798 0.6 ATF1 ZNF792 ZIC2 ZEB1 HIC1 ZFHX2 GLIS2 PATZ1 ZNF600 PRDM10 FAM60A FLJ13224 IPO8 DDX11 LOC101060058 PIR58939 GC12P031123
GH12G031361 1.4 Ensembl ENCODE dbSUPER 11.7 +38.7 38723 2.4 HDGF PKNOX1 ATF1 FOXA2 WRNIP1 ARID4B ZNF48 ZNF121 GLIS2 SP5 FAM60A RNU6-618P FLJ13224 AK4P3 DDX11 DENND5B ENSG00000283256 GC12P031343
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ13224 on UCSC Golden Path with GeneCards custom track

Promoters for FLJ13224 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000050562 684 4001 HDGF FOXA2 CREB3L1 ARNT AGO1 WRNIP1 SIN3A ARID4B DMAP1 ZNF2

Genomic Location for FLJ13224 Gene

Chromosome:
12
Start:
31,324,316 bp from pter
End:
31,325,945 bp from pter
Size:
1,630 bases
Orientation:
Plus strand

Genomic View for FLJ13224 Gene

Genes around FLJ13224 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ13224 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ13224 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ13224 Gene

Proteins for FLJ13224 Gene

Post-translational modifications for FLJ13224 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ13224 Gene

Domains & Families for FLJ13224 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ13224 Gene

Function for FLJ13224 Gene

Phenotypes for FLJ13224 Gene

GenomeRNAi human phenotypes for FLJ13224:
genes like me logo Genes that share phenotypes with FLJ13224: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ13224 Gene

Localization for FLJ13224 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ13224 Gene

Pathways & Interactions for FLJ13224 Gene

SuperPathways for FLJ13224 Gene

No Data Available

Interacting Proteins for FLJ13224 Gene

Gene Ontology (GO) - Biological Process for FLJ13224 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ13224 Gene

Drugs & Compounds for FLJ13224 Gene

No Compound Related Data Available

Transcripts for FLJ13224 Gene

mRNA/cDNA for FLJ13224 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ13224 Gene

Uncharacterized LOC79857:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ13224 Gene

No ASD Table

Relevant External Links for FLJ13224 Gene

GeneLoc Exon Structure for
FLJ13224

Expression for FLJ13224 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ13224 Gene

SOURCE GeneReport for Unigene cluster for FLJ13224 Gene:

Hs.534485
genes like me logo Genes that share expression patterns with FLJ13224: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ13224 Gene

Orthologs for FLJ13224 Gene

Evolution for FLJ13224 Gene

ENSEMBL:
Gene Tree for FLJ13224 (if available)
TreeFam:
Gene Tree for FLJ13224 (if available)

No data available for Orthologs for FLJ13224 Gene

Paralogs for FLJ13224 Gene

No data available for Paralogs for FLJ13224 Gene

Variants for FLJ13224 Gene

Sequence variations from dbSNP and Humsavar for FLJ13224 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000709369 -- 31,323,859(+) GGCTG(A/G)GGAGG intron-variant, upstream-variant-2KB
rs1001459710 -- 31,324,457(+) GGAGC(C/G)GGGAA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001558852 -- 31,324,454(+) CCCGG(A/G)GCGGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1002217473 -- 31,324,192(+) CGCCT(C/G)CCGCA intron-variant, upstream-variant-2KB, reference, missense
rs1002819039 -- 31,325,477(+) ACTTA(A/G)TTTCC intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FLJ13224 Gene

Variant ID Type Subtype PubMed ID
dgv63e55 CNV gain 17911159
esv2751043 CNV gain 17911159
esv2751046 CNV gain 17911159
esv2759890 CNV gain+loss 17122850
nsv428276 CNV gain 18775914
nsv661 CNV insertion 18451855
nsv832364 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ13224 Gene

Disorders for FLJ13224 Gene

Relevant External Links for FLJ13224

Genetic Association Database (GAD)
FLJ13224
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ13224

No disorders were found for FLJ13224 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ13224 Gene

Publications for FLJ13224 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FLJ13224 Gene

Sources for FLJ13224 Gene

Content
Loading form....